RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA688352", tax_clade = "Caldisericota/Cryosericota group" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Caldisericota/Cryosericota group · 4 ✖

bioproject 1

  • PRJNA688352 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27176873 27176873 PRJNA688352_P_NODE_8422_length_249_cov_0.875000_g8319_i0 PRJNA688352 8422 249 0.875 2.17875 Caldisericia bacterium 2758719 Bacteria Bacteria 159 2.21e-45   NR HOU08891.1 2758719 g8319 i0 100 1.97590361445783 82 0 98.8 0 248 3 213 294 HOU08891.1 HAD-IC family P-type ATPase [Caldisericia bacterium] diamond 492 159 1 Bacteria Caldisericota/Cryosericota group Pseudomonadati Caldisericota Caldisericia       Caldisericia bacterium
27745855 27745855 PRJNA688352_P_NODE_7444_length_251_cov_0.865169_g7341_i0 PRJNA688352 7444 251 0.865169 2.17157419 Caldisericales bacterium 2614251 Bacteria Bacteria 192 1.11e-57   NR NMD14029.1 2614251 g7341 i0 100 0.99203187250996006 83 0 99.2 0 1 249 269 351 NMD14029.1 hypothetical protein [Caldisericales bacterium] diamond 249 192 1 Bacteria Caldisericota/Cryosericota group Pseudomonadati Caldisericota Caldisericia Caldisericales     Caldisericales bacterium
30367018 30367018 PRJNA688352_P_NODE_8952_length_248_cov_0.880000_g8849_i0 PRJNA688352 8952 248 0.88 2.1824 Caldisericota bacterium 2052147 Bacteria Bacteria 130 7.5e-33   NR MDO9099931.1 2052147 g8849 i0 81.7 0.991935483870968 82 15 99.2 0 247 2 668 749 MDO9099931.1 preprotein translocase subunit SecA [Caldisericota bacterium] diamond 246 130 1 Bacteria Caldisericota/Cryosericota group Pseudomonadati Caldisericota         Caldisericota bacterium
32800201 32800201 PRJNA688352_P_NODE_10760_length_244_cov_0.900585_g10657_i0 PRJNA688352 10760 244 0.900585 2.1974274 Caldisericales bacterium 2614251 Bacteria Bacteria 155 4.98e-44   NR NLI41113.1 2614251 g10657 i0 95.1 0.995901639344262 81 4 99.6 0 243 1 154 234 NLI41113.1 hypothetical protein [Caldisericales bacterium] diamond 243 155 1 Bacteria Caldisericota/Cryosericota group Pseudomonadati Caldisericota Caldisericia Caldisericales     Caldisericales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;