RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA688352", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Gottesmaniibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Gottesmaniibacteriota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA688352 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27504782 27504782 PRJNA688352_P_NODE_11263_length_243_cov_0.905882_g11160_i0 PRJNA688352 11263 243 0.905882 2.20129326 Bacteria 2 Bacteria Bacteria 152 1.42e-40   NR OGG14551.1 1798375 g11160 i0 90 1.97530864197531 80 8 98.8 0 2 241 303 382 OGG14551.1 MAG: hypothetical protein A2773_07205 [Candidatus Gottesmanbacteria bacterium RIFCSPHIGHO2_01_FULL_39_10] diamond 480 152 1 Bacteria Bacteria candidate phyla   Candidatus Gottesmaniibacteriota         Candidatus Gottesmanbacteria bacterium RIFCSPHIGHO2_01_FULL_39_10
31610904 31610904 PRJNA688352_P_NODE_8836_length_248_cov_0.880000_g8733_i0 PRJNA688352 8836 248 0.88 2.1824 Bacteria 2 Bacteria Bacteria 90.5 1.21e-20   NR KKT46134.1 1618444 g8733 i0 72.4 4.86290322580645 58 16 70.2 0 75 248 2 59 KKT46134.1 MAG: Isopentenyl-diphosphate Delta-isomerase [Candidatus Gottesmanbacteria bacterium GW2011_GWA2_44_17] diamond 1206 90.5 1 Bacteria Bacteria candidate phyla   Candidatus Gottesmaniibacteriota         Candidatus Gottesmanbacteria bacterium GW2011_GWA2_44_17
31820521 31820521 PRJNA688352_P_NODE_8697_length_248_cov_0.880000_g8594_i0 PRJNA688352 8697 248 0.88 2.1824 Candidatus Gottesmanbacteria bacterium RIFOXYB1_FULL_47_11 1798401 Bacteria Bacteria 60.5 2.07e-8   NR OGG34914.1 1798401 g8594 i0 75.7 0.44758064516129 37 9 44.8 0 115 5 1 37 OGG34914.1 MAG: RNA polymerase sigma factor RpoD [Candidatus Gottesmanbacteria bacterium RIFOXYB1_FULL_47_11] diamond 111 60.5 1 Bacteria Bacteria candidate phyla   Candidatus Gottesmaniibacteriota         Candidatus Gottesmanbacteria bacterium RIFOXYB1_FULL_47_11

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;