RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA688157" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA688157 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1942810 1942810 PRJNA688157_S_NODE_42162_length_319_cov_3.373984_g42020_i0 PRJNA688157 42162 319 3.373984 10.76300896 Biomphalaria glabrata 6526 Mollusca Mollusca 52.8 0.03   NTclustered gi|2502116914|ref|XM_056006001.1| 6526 g42020 i0 100 0.526645768025078 28 0 9 0 1 28 3588 3561 PREDICTED: Biomphalaria glabrata UPF0764 protein C16orf89 homolog (LOC106056145), transcript variant X1, mRNA blastn 168 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Planorbidae Biomphalaria Biomphalaria glabrata
5770457 5770457 PRJNA688157_S_NODE_35465_length_335_cov_6.267176_g35323_i0 PRJNA688157 35465 335 6.267176 20.9950396 Bradybaena similaris 145626 Mollusca Mollusca 54.7 0.009   NTclustered gi|2913000417|dbj|AP039607.1| 145626 g35323 i0 96.875 0.191044776119403 32 1 10 0 241 272 8068705 8068736 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 26, sequence blastn 64 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;