RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA688157" and tax_kingdom = "Pararnavirae"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA688157 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7554583 7554583 PRJNA688157_S_NODE_63426_length_280_cov_2.913043_g63284_i0 PRJNA688157 63426 280 2.913043 8.1565204 Alpharetrovirus 153057 Viruses Viruses 374 4.849999999999998e-99   NTclustered gi|9629900|ref|NC_001866.1| 11867 g63284 i0 100 72.1821428571429 202 0 72 0 79 280 3068 2867 Avian myelocytomatosis virus, complete genome blastn 20211 374 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Avian myelocytomatosis virus
28787374 28787374 PRJNA688157_S_NODE_507_length_996_cov_10.564464_g463_i0 PRJNA688157 507 996 10.564464 105.22206144 Moloney murine leukemia virus 11801 Viruses Viruses 610 4.4799999999999985e-202   NR NP_057933.2 11801 g463 i0 97.8 0.94578313253012 314 7 94.6 0 996 55 1022 1335 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 942 610 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
28882184 28882184 PRJNA688157_S_NODE_328_length_1112_cov_17.203080_g296_i0 PRJNA688157 328 1112 17.20308 191.2982496 Gammaretrovirus murleu 3428959 Viruses Viruses 719 2.7400000000000005e-259   NR 8WUS_E 11801 g296 i0 98.6 8.63579136690647 356 5 96 0 1073 6 19 374 8WUS_E Chain E, Gag-Pol polyprotein [Moloney murine leukemia virus] diamond 9603 719 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;