RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA685607" and tax_phylum = "Bdellovibrionota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA685607 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27587836 27587836 PRJNA685607_P_NODE_72424_length_249_cov_0.875000_g72065_i0 PRJNA685607 72424 249 0.875 2.17875 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 51.2 2.55e-5   NR MBA2404731.1 2053517 g72065 i0 43.7 0.855421686746988 71 39 84.3 1 15 224 100 170 MBA2404731.1 trypsin-like serine protease [Bdellovibrionales bacterium] diamond 213 51.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
28156281 28156281 PRJNA685607_P_NODE_89365_length_243_cov_0.905882_g89006_i0 PRJNA685607 89365 243 0.905882 2.20129326 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 56.6 2.72e-8   NR PZQ48452.1 349221 g89006 i0 76.9 1.87654320987654 39 9 48.1 0 124 240 33 71 PZQ48452.1 MAG: flagellar biosynthetic protein FliQ [Micavibrio aeruginosavorus] diamond 456 56.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
29450354 29450354 PRJNA685607_P_NODE_56170_length_266_cov_1.585492_g55811_i0 PRJNA685607 56170 266 1.585492 4.21740872 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 43.1 0.0335   NR NQZ00648.1 2053517 g55811 i0 52.9 0.383458646616541 34 16 38.3 0 55 156 271 304 NQZ00648.1 hypothetical protein [Bdellovibrionales bacterium] diamond 102 43.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32874825 32874825 PRJNA685607_P_NODE_90780_length_243_cov_0.905882_g90421_i0 PRJNA685607 90780 243 0.905882 2.20129326 Bacteria 2 Bacteria Bacteria 135 2.28e-37   NR HEY8270671.1 2026715 g90421 i0 83.8 4.9382716049382704 80 13 98.8 0 241 2 66 145 HEY8270671.1 glutamate 5-kinase [Pseudobdellovibrionaceae bacterium] diamond 1200 135 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;