RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA685607", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA685607 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4494282 4494282 PRJNA685607_P_NODE_57464_length_264_cov_1.209424_g57105_i0 PRJNA685607 57464 264 1.209424 3.19287936 Malaciobacter marinus 505249 Bacteria Bacteria 52.8 0.024   NTclustered gi|1474785413|gb|CP032101.1| 505249 g57105 i0 100 0.106060606060606 28 0 11 0 57 84 1771318 1771291 Malaciobacter marinus strain JCM 15502 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Malaciobacter Malaciobacter marinus
27493075 27493075 PRJNA685607_P_NODE_72403_length_249_cov_0.875000_g72044_i0 PRJNA685607 72403 249 0.875 2.17875 Helicobacter pylori 210 Bacteria Bacteria 46.2 1.79e-4   NR GAA8930966.1 210 g72044 i0 90.5 0.253012048192771 21 2 25.3 0 248 186 26 46 GAA8930966.1 hypothetical protein Kyoto166A_4300 [Helicobacter pylori] diamond 63 46.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31346295 31346295 PRJNA685607_P_NODE_68296_length_250_cov_0.870056_g67937_i0 PRJNA685607 68296 250 0.870056 2.17514 Helicobacteraceae bacterium 2212472 Bacteria Bacteria 48.5 3.76e-4   NR MDR2905972.1 2212472 g67937 i0 44.6 0.78 65 33 74.4 3 249 64 295 359 MDR2905972.1 ribonuclease R [Helicobacteraceae bacterium] diamond 195 48.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae   Helicobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;