RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA685607", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 6 ✖

tax_kingdom 1

  • Bacillati · 6 ✖

bioproject 1

  • PRJNA685607 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15205031 15205031 PRJNA685607_P_NODE_49252_length_280_cov_1.067633_g48893_i0 PRJNA685607 49252 280 1.067633 2.9893724 Armatimonadota bacterium 2033014 Bacteria Bacteria 87.8 8.31e-18   NR MCX6345618.1 2033014 g48893 i0 53.8 9.36428571428571 80 36 84.6 1 237 1 454 533 MCX6345618.1 ABC transporter ATP-binding protein [Armatimonadota bacterium] diamond 2622 87.8 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
28503403 28503403 PRJNA685607_P_NODE_65347_length_251_cov_0.865169_g64988_i0 PRJNA685607 65347 251 0.865169 2.17157419 Armatimonadota bacterium 2033014 Bacteria Bacteria 81.3 9.7e-16   NR MBC8137260.1 2033014 g64988 i0 54.5 0.920318725099602 77 34 90.8 1 229 2 301 377 MBC8137260.1 hypothetical protein [Armatimonadota bacterium] diamond 231 81.3 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
29292685 29292685 PRJNA685607_P_NODE_19889_length_377_cov_1.253289_g19531_i0 PRJNA685607 19889 377 1.253289 4.72489953 Armatimonadia bacterium 2663015 Bacteria Bacteria 102 9.3e-24   NR MEN6400861.1 2663015 g19531 i0 50 0.986737400530504 124 55 96.3 3 13 375 68 187 MEN6400861.1 hypothetical protein [Armatimonadia bacterium] diamond 372 102 1 Bacteria   Bacillati Armatimonadota Armatimonadia       Armatimonadia bacterium
30777402 30777402 PRJNA685607_P_NODE_84494_length_245_cov_0.895349_g84135_i0 PRJNA685607 84494 245 0.895349 2.19360505 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 64.3 9.12e-10   NR MDX2066498.1 2682144 g84135 i0 64 0.612244897959184 50 18 61.2 0 78 227 366 415 MDX2066498.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme [Fimbriimonadaceae bacterium] diamond 150 64.3 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
31673950 31673950 PRJNA685607_P_NODE_30877_length_327_cov_1.141732_g30518_i0 PRJNA685607 30877 327 1.141732 3.73346364 Bacteria 2 Bacteria Bacteria 108 2.43e-25   NR MBN9502292.1 2033014 g30518 i0 57 1.88073394495413 93 38 85.3 1 19 297 8 98 MBN9502292.1 extracellular solute-binding protein [Armatimonadota bacterium] diamond 615 108 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
32327276 32327276 PRJNA685607_P_NODE_86119_length_244_cov_0.900585_g85760_i0 PRJNA685607 86119 244 0.900585 2.1974274 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 44.3 0.0108   NR MFQ3587149.1 2682144 g85760 i0 65.6 3 32 11 39.3 0 148 243 206 237 MFQ3587149.1 bifunctional metallophosphatase/5'-nucleotidase [Fimbriimonadaceae bacterium] diamond 732 44.3 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;