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contig_metadata

20 rows where bioproject = "PRJNA685607", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 20 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 20 ✖

bioproject 1

  • PRJNA685607 · 20 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1942213 1942213 PRJNA685607_P_NODE_10062_length_491_cov_1.837321_g9706_i0 PRJNA685607 10062 491 1.837321 9.02124611 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 240 1.59e-74   NR KAE9556733.1 2598192 g9706 i0 65.6 55.9368635437882 163 54 98.4 1 483 1 2 164 KAE9556733.1 hypothetical protein FO519_000139 [Halicephalobus sp. NKZ332] diamond 27465 240 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332
8319647 8319647 PRJNA685607_P_NODE_9387_length_507_cov_2.131336_g9031_i0 PRJNA685607 9387 507 2.131336 10.80587352 Opisthokonta 33154 Nematoda Nematoda 215 5.74e-68   NR KFD50978.1 68888 g9031 i0 72.4 27.7159763313609 145 40 85.8 0 504 70 54 198 KFD50978.1 hypothetical protein M513_08161, partial [Trichuris suis] diamond 14052 215 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
9594844 9594844 PRJNA685607_P_NODE_14548_length_423_cov_1.788571_g14190_i0 PRJNA685607 14548 423 1.788571 7.56565533 Pristionchus pauli 376545 Nematoda Nematoda 278 6.180000000000001e-70   NTclustered gi|150982019|gb|EF634598.1| 376545 g14190 i0 81.197 5.3096926713948 351 60 82 6 10 357 384 37 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 2246 278 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli
10870273 10870273 PRJNA685607_P_NODE_18729_length_385_cov_1.320513_g18371_i0 PRJNA685607 18729 385 1.320513 5.08397505 Metazoa 33208 Nematoda Nematoda 181 9.6e-55   NR KAK6031123.1 6317 g18371 i0 78.9 56.4467532467532 114 24 88.8 0 343 2 46 159 KAK6031123.1 ribosomal protein L5 [Ostertagia ostertagi] diamond 21732 182 0.994505494505495 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Ostertagia Ostertagia ostertagi
13930207 13930207 PRJNA685607_P_NODE_2911_length_922_cov_2.702002_g2636_i0 PRJNA685607 2911 922 2.702002 24.91245844 Globodera pallida 36090 Nematoda Nematoda 239 1.98e-72   NR KAI3413796.1 36090 g2636 i0 61.2 11.9577006507592 196 73 63.4 2 921 337 212 405 KAI3413796.1 translation elongation factor 2 [Globodera pallida] diamond 11025 239 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Globodera Globodera pallida
17244224 17244224 PRJNA685607_P_NODE_21174_length_369_cov_1.560811_g20815_i0 PRJNA685607 21174 369 1.560811 5.75939259 Strongyloides ratti 34506 Nematoda Nematoda 300 1.13e-76   NTclustered gi|1376147859|ref|XM_024654603.1| 34506 g20815 i0 82.456 125.859078590786 342 60 93 0 1 342 342 1 Strongyloides ratti Polyubiquitin-C (SRAE_2000341300), partial mRNA blastn 46442 300 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
23619221 23619221 PRJNA685607_P_NODE_59879_length_259_cov_4.451613_g59520_i0 PRJNA685607 59879 259 4.451613 11.52967767 Caenorhabditis briggsae 6238 Nematoda Nematoda 224 4.72e-54   NTclustered gi|268537031|ref|XM_002633606.1| 6238 g59520 i0 87.565 69.046332046332 193 24 75 0 1 193 247 55 Caenorhabditis briggsae Protein CBR-RPS-23 (Cbr-rps-23), partial mRNA blastn 17883 224 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
27113635 27113635 PRJNA685607_P_NODE_23722_length_355_cov_1.092199_g23363_i0 PRJNA685607 23722 355 1.092199 3.87730645 Ditylenchus destructor 166010 Nematoda Nematoda 130 2.9899999999999997e-35   NR KAI1731507.1 166010 g23363 i0 60 0.971830985915493 115 39 97.2 1 347 3 42 149 KAI1731507.1 ribosomal protein l13e domain-containing protein [Ditylenchus destructor] diamond 345 130 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Ditylenchus Ditylenchus destructor
27271855 27271855 PRJNA685607_P_NODE_39143_length_302_cov_1.707424_g38784_i0 PRJNA685607 39143 302 1.707424 5.15642048 Caenorhabditis auriculariae 2777116 Nematoda Nematoda 84 2.51e-16   NR CAD6191919.1 2777116 g38784 i0 50.5 4.71854304635762 101 38 88.4 3 302 36 676 776 CAD6191919.1 unnamed protein product [Caenorhabditis auriculariae] diamond 1425 84 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis auriculariae
28230533 28230533 PRJNA685607_P_NODE_79946_length_246_cov_0.890173_g79587_i0 PRJNA685607 79946 246 0.890173 2.18982558 Caenorhabditis 6237 Nematoda Nematoda 89 1.64e-18   NR UMM11641.1 6238 g79587 i0 57.8 7.8780487804878 64 27 78 0 13 204 145 208 UMM11641.1 hypothetical protein L5515_000827 [Caenorhabditis briggsae] diamond 1938 89.4 0.995525727069351 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
28830570 28830570 PRJNA685607_P_NODE_48208_length_282_cov_1.095694_g47849_i0 PRJNA685607 48208 282 1.095694 3.08985708 Trichinella 6333 Nematoda Nematoda 130 4.84e-33   NR KRY35830.1 6334 g47849 i0 58.1 19.6170212765957 93 39 98.9 0 281 3 206 298 KRY35830.1 60S ribosomal protein L5 [Trichinella spiralis] diamond 5532 131 0.99236641221374 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
29260961 29260961 PRJNA685607_P_NODE_67169_length_250_cov_2.954802_g66810_i0 PRJNA685607 67169 250 2.954802 7.387005 Meloidogyne enterolobii 390850 Nematoda Nematoda 94.4 1.09e-21   NR CAD2170439.1 390850 g66810 i0 59.3 4.872 81 32 97.2 1 8 250 5 84 CAD2170439.1 unnamed protein product [Meloidogyne enterolobii] diamond 1218 94.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii
29430367 29430367 PRJNA685607_P_NODE_13229_length_439_cov_2.877049_g12871_i0 PRJNA685607 13229 439 2.877049 12.63024511 Metazoa 33208 Nematoda Nematoda 170 2.31e-51   NR KHN76788.1 6265 g12871 i0 57.7 40.6332574031891 142 60 97 0 427 2 9 150 KHN76788.1 40S ribosomal protein S15 [Toxocara canis] diamond 17838 171 0.994152046783626 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
29608093 29608093 PRJNA685607_P_NODE_63330_length_253_cov_1.883333_g62971_i0 PRJNA685607 63330 253 1.883333 4.76483249 Meloidogyne graminicola 189291 Nematoda Nematoda 44.3 0.0119   NR KAF7633550.1 189291 g62971 i0 38.6 3.3201581027668 70 38 83 2 218 9 694 758 KAF7633550.1 SSD domain-containing protein [Meloidogyne graminicola] diamond 840 44.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
31042000 31042000 PRJNA685607_P_NODE_45755_length_287_cov_1.051402_g45396_i0 PRJNA685607 45755 287 1.051402 3.01752374 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 120 6.03e-32   NR CDW52717.1 36087 g45396 i0 65.3 18.8675958188153 95 33 99.3 0 3 287 17 111 CDW52717.1 60S ribosomal protein L19 [Trichuris trichiura] diamond 5415 120 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura
31219322 31219322 PRJNA685607_P_NODE_45375_length_288_cov_0.762791_g45016_i0 PRJNA685607 45375 288 0.762791 2.19683808 Meloidogyne enterolobii 390850 Nematoda Nematoda 44.3 0.0189   NR CAK5069761.1 390850 g45016 i0 37 2.4375 81 45 83.3 3 49 288 726 801 CAK5069761.1 unnamed protein product [Meloidogyne enterolobii] diamond 702 44.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii
31820505 31820505 PRJNA685607_P_NODE_80077_length_246_cov_0.890173_g79718_i0 PRJNA685607 80077 246 0.890173 2.18982558 Toxocara canis 6265 Nematoda Nematoda 73.2 5.17e-13   NR KHN85935.1 6265 g79718 i0 45 5.42682926829268 80 40 92.7 2 239 12 125 204 KHN85935.1 Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase wee-1.3, partial [Toxocara canis] diamond 1335 73.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
32528521 32528521 PRJNA685607_P_NODE_46359_length_286_cov_0.793427_g46000_i0 PRJNA685607 46359 286 0.793427 2.26920122 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 48.9 2.84e-4   NR VDL79671.1 27835 g46000 i0 77.4 0.65034965034965 31 7 32.5 0 2 94 146 176 VDL79671.1 unnamed protein product [Nippostrongylus brasiliensis] diamond 186 48.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Nippostrongylus Nippostrongylus brasiliensis
32705765 32705765 PRJNA685607_P_NODE_83360_length_245_cov_0.895349_g83001_i0 PRJNA685607 83360 245 0.895349 2.19360505 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 108 2.65e-25   NR CAD5209251.1 6326 g83001 i0 63.2 7.00408163265306 76 28 93.1 0 9 236 164 239 CAD5209251.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 1716 108 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
32737554 32737554 PRJNA685607_P_NODE_89700_length_243_cov_0.905882_g89341_i0 PRJNA685607 89700 243 0.905882 2.20129326 Heterodera trifolii 157864 Nematoda Nematoda 92 1.79e-20   NR KAL3119325.1 157864 g89341 i0 64.8 2.7283950617284 71 25 87.7 0 26 238 7 77 KAL3119325.1 hypothetical protein niasHT_001085 [Heterodera trifolii] diamond 663 92 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera trifolii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;