RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA685607", tax_clade = "Metamonada" and tax_phylum = "Preaxostyla"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Preaxostyla · 3 ✖

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA685607 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3217284 3217284 PRJNA685607_P_NODE_67263_length_250_cov_1.740113_g66904_i0 PRJNA685607 67263 250 1.740113 4.3502825 Monocercomonoides exilis 2049356 Preaxostyla other_Eukaryota 54.7 0.006   NTclustered gi|2794974031|ref|XM_067862771.1| 2049356 g66904 i0 100 0.24 29 0 12 0 197 225 8777 8749 Monocercomonoides exilis putative guanylate kinase (MONOS_10329), partial mRNA blastn 60 54.7 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Polymastigidae Monocercomonoides Monocercomonoides exilis
30283807 30283807 PRJNA685607_P_NODE_62432_length_255_cov_1.269231_g62073_i0 PRJNA685607 62432 255 1.269231 3.23653905 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 102 3.48e-25   NR KAJ4455480.1 342808 g62073 i0 59.5 2.96470588235294 84 32 98.8 1 253 2 57 138 KAJ4455480.1 putative 60S ribosomal protein L17 [Paratrimastix pyriformis] diamond 756 103 0.990291262135922 Eukaryota Metamonada   Preaxostyla     Paratrimastigidae Paratrimastix Paratrimastix pyriformis
31073345 31073345 PRJNA685607_P_NODE_42295_length_294_cov_2.361991_g41936_i0 PRJNA685607 42295 294 2.361991 6.94425354 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 121 1.3e-29   NR KAJ4462071.1 342808 g41936 i0 61.7 7.33673469387755 94 36 95.9 0 287 6 703 796 KAJ4462071.1 putative Multisubstrate pseudouridine synthase 7 [Paratrimastix pyriformis] diamond 2157 121 1 Eukaryota Metamonada   Preaxostyla     Paratrimastigidae Paratrimastix Paratrimastix pyriformis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;