RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA685607", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA685607 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26682223 26682223 PRJNA685607_P_NODE_74201_length_248_cov_0.880000_g73842_i0 PRJNA685607 74201 248 0.88 2.1824 Pseudomonadati 3379134 Bacteria Bacteria 55.1 1.76e-6   NR HUF34835.1 2448054 g73842 i0 42.5 6.71370967741935 80 31 96.8 2 244 5 72 136 HUF34835.1 S8 family serine peptidase [Gemmatimonadales bacterium] diamond 1665 55.5 0.992792792792793 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
29513563 29513563 PRJNA685607_P_NODE_39590_length_301_cov_1.350877_g39231_i0 PRJNA685607 39590 301 1.350877 4.06613977 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 55.1 3.43e-6   NR MDX2207057.1 2448054 g39231 i0 38.8 2.43189368770764 67 40 66.8 1 213 13 340 405 MDX2207057.1 leishmanolysin-related zinc metalloendopeptidase [Gemmatimonadales bacterium] diamond 732 55.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;