RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA685607" and tax_clade = "Apusozoa"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • Apusozoa · 9 ✖

bioproject 1

  • PRJNA685607 · 9 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1942408 1942408 PRJNA685607_P_NODE_74482_length_248_cov_0.880000_g74123_i0 PRJNA685607 74482 248 0.88 2.1824 Thecamonas trahens 529818 Root_unresolved Root_unresolved 254 5.73e-63   NTclustered gi|923130274|ref|XM_013903149.1| 461836 g74123 i0 88.942 84.7056451612903 208 19 83 4 3 208 258 53 Thecamonas trahens ATCC 50062 14-3-3 family protein epsilon (AMSG_04940), partial mRNA blastn 21007 254 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
4494388 4494388 PRJNA685607_P_NODE_82864_length_245_cov_0.895349_g82505_i0 PRJNA685607 82864 245 0.895349 2.19360505 Thecamonas trahens 529818 Root_unresolved Root_unresolved 169 2.1e-37   NTclustered gi|923133140|ref|XM_013904582.1| 461836 g82505 i0 88.489 51.5755102040816 139 16 57 0 1 139 139 1 Thecamonas trahens ATCC 50062 Ras-like protein rasG (AMSG_03185), partial mRNA blastn 12636 169 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
15969040 15969040 PRJNA685607_P_NODE_52713_length_273_cov_1.155000_g52354_i0 PRJNA685607 52713 273 1.155 3.15315 Thecamonas trahens 529818 Root_unresolved Root_unresolved 108 5.27e-19   NTclustered gi|923122061|ref|XM_013899047.1| 461836 g52354 i0 88.764 0.538461538461538 89 8 32 2 179 266 719 632 Thecamonas trahens ATCC 50062 40S ribosomal protein S1 (AMSG_08716), mRNA blastn 147 108 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
21068940 21068940 PRJNA685607_P_NODE_9337_length_508_cov_2.848276_g8981_i0 PRJNA685607 9337 508 2.848276 14.46924208 Thecamonas trahens 529818 Root_unresolved Root_unresolved 257 9.81e-64   NTclustered gi|923134252|ref|XM_013905138.1| 461836 g8981 i0 78.52 31.2952755905512 419 70 80 15 1 406 609 198 Thecamonas trahens ATCC 50062 adenine nucleotide translocator (AMSG_02751), mRNA blastn 15898 257 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
26702192 26702192 PRJNA685607_P_NODE_27941_length_337_cov_1.750000_g27582_i0 PRJNA685607 27941 337 1.75 5.8975 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 122 1.73e-29   NR XP_013762907.1 461836 g27582 i0 50 3.47181008902077 130 47 99.7 1 2 337 179 308 XP_013762907.1 elongation factor 2 [Thecamonas trahens ATCC 50062] diamond 1170 122 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
28850495 28850495 PRJNA685607_P_NODE_93928_length_242_cov_0.899408_g93569_i0 PRJNA685607 93928 242 0.899408 2.17656736 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 66.2 1.75e-11   NR XP_013758370.1 461836 g93569 i0 47.8 0.830578512396694 67 35 83.1 0 16 216 78 144 XP_013758370.1 uncharacterized protein AMSG_04698 [Thecamonas trahens ATCC 50062] diamond 201 66.2 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
30113729 30113729 PRJNA685607_P_NODE_39212_length_302_cov_1.344978_g38853_i0 PRJNA685607 39212 302 1.344978 4.06183356 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 50.8 1.06e-4   NR XP_013761313.1 461836 g38853 i0 37.2 0.854304635761589 86 50 83.4 2 258 7 10 93 XP_013761313.1 V-type H(+)-translocating pyrophosphatase, variant [Thecamonas trahens ATCC 50062] diamond 258 50.8 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
30176903 30176903 PRJNA685607_P_NODE_32952_length_320_cov_1.246964_g32593_i0 PRJNA685607 32952 320 1.246964 3.9902848 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 156 3.9e-43   NR XP_013756098.1 461836 g32593 i0 64.2 0.99375 106 38 99.4 0 318 1 54 159 XP_013756098.1 citrate synthase [Thecamonas trahens ATCC 50062] diamond 318 156 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
32580151 32580151 PRJNA685607_P_NODE_55599_length_267_cov_1.793814_g55240_i0 PRJNA685607 55599 267 1.793814 4.78948338 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 51.6 9.4e-6   NR XP_013759878.1 461836 g55240 i0 42.1 2.58426966292135 57 33 64 0 175 5 6 62 XP_013759878.1 calponin [Thecamonas trahens ATCC 50062] diamond 690 52 0.992307692307692 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;