RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA685060", tax_phylum = "Negarnaviricota" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 5 ✖

tax_phylum 1

  • Negarnaviricota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA685060 · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6280048 6280048 PRJNA685060_P_NODE_7265_length_353_cov_1.753571_g7175_i0 PRJNA685060 7265 353 1.753571 6.19010563 Alphainfluenzavirus 197911 Viruses Viruses 641 1.5599999999999998e-179   NTclustered gi|1933609284|gb|MW265304.1| 11320 g7175 i0 99.433 100 353 2 100 0 1 353 1383 1031 Influenza A virus (A/chicken/Jiangsu/XZ181/2014(H7N9)) segment 5 nucleocapsid protein (NP) gene, complete cds blastn 35300 641 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
11379594 11379594 PRJNA685060_P_NODE_4489_length_458_cov_2.000000_g4399_i0 PRJNA685060 4489 458 2 9.16 root 1 Root_unresolved Root_unresolved 752 0   NTclustered gi|1933608805|gb|MW265105.1| 11320 g4399 i0 100 102.401746724891 407 0 100 0 1 407 878 1284 Influenza A virus (A/chicken/Jiangsu/WJ110/2013(H7N9)) segment 4 hemagglutinin (HA) gene, complete cds blastn 46900 752 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
13930012 13930012 PRJNA685060_P_NODE_11871_length_271_cov_1.090909_g11781_i0 PRJNA685060 11871 271 1.090909 2.95636339 Alphainfluenzavirus 197911 Viruses Viruses 496 9.55e-136   NTclustered gi|1562367602|gb|MK447370.1| 11320 g11781 i0 99.631 100 271 1 100 0 1 271 371 641 Influenza A virus (A/chicken/China/819/2015(H9N2)) segment 8 nuclear export protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds blastn 27100 496 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
25402582 25402582 PRJNA685060_P_NODE_8260_length_331_cov_1.193798_g8170_i0 PRJNA685060 8260 331 1.193798 3.95147138 Alphainfluenzavirus 197911 Viruses Viruses 606 5.299999999999998e-169   NTclustered gi|1575372779|gb|MK530408.1| 11320 g8170 i0 99.698 100 331 1 100 0 1 331 932 602 Influenza A virus (A/chicken/China/0606-17/2013(H7N9)) segment 5 nucleocapsid protein (NP) gene, partial cds blastn 33100 606 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
32516958 32516958 PRJNA685060_P_NODE_9939_length_299_cov_2.367257_g9849_i0 PRJNA685060 9939 299 2.367257 7.07809843 Rhabdoviridae sp. 1955137 Viruses Viruses 69.7 2.34e-11   NR XKB76561.1 1955137 g9849 i0 37.1 0.973244147157191 97 60 96.3 1 298 11 282 378 XKB76561.1 MAG: hypothetical protein [Rhabdoviridae sp.] diamond 291 69.7 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Rhabdoviridae sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;