RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA685060" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA685060 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26702170 26702170 PRJNA685060_P_NODE_10641_length_288_cov_1.525581_g10551_i0 PRJNA685060 10641 288 1.525581 4.39367328 Myxococcota bacterium 2818507 Bacteria Bacteria 44.3 0.0175   NR MEM1032830.1 2818507 g10551 i0 37.9 0.604166666666667 58 27 60.4 1 13 186 45 93 MEM1032830.1 hypothetical protein [Myxococcota bacterium] diamond 174 44.3 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
27493067 27493067 PRJNA685060_P_NODE_7623_length_345_cov_1.180147_g7533_i0 PRJNA685060 7623 345 1.180147 4.07150715 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 168 6.579999999999999e-48   NR MDP2345811.1 2026735 g7533 i0 74.1 0.973913043478261 112 29 97.4 0 9 344 161 272 MDP2345811.1 SPFH domain-containing protein [Deltaproteobacteria bacterium] diamond 336 168 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28503369 28503369 PRJNA685060_P_NODE_10887_length_285_cov_1.221698_g10797_i0 PRJNA685060 10887 285 1.221698 3.4818393 Polyangiaceae bacterium 2268199 Bacteria Bacteria 80.1 3.93e-15   NR NUP13379.1 2268199 g10797 i0 49.4 0.852631578947368 81 40 84.2 1 264 25 118 198 NUP13379.1 hypothetical protein [Polyangiaceae bacterium] diamond 243 80.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
29103411 29103411 PRJNA685060_P_NODE_12048_length_268_cov_1.579487_g11958_i0 PRJNA685060 12048 268 1.579487 4.23302516 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 53.9 5.08e-6   NR MBW2119348.1 2026735 g11958 i0 35.6 1.90298507462687 87 54 97.4 1 263 3 2 86 MBW2119348.1 AMP-binding protein [Deltaproteobacteria bacterium] diamond 510 53.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31958714 31958714 PRJNA685060_P_NODE_8357_length_329_cov_1.089844_g8267_i0 PRJNA685060 8357 329 1.089844 3.58558676 Myxococcales 29 Bacteria Bacteria 89 6.38e-18   NR WP_407743218.1 2028555 g8267 i0 40.7 3.93920972644377 108 64 98.5 0 327 4 1246 1353 WP_407743218.1 MG2 domain-containing protein [Hyalangium sp.] diamond 1296 89.7 0.992196209587514 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Hyalangium Hyalangium sp.
32705747 32705747 PRJNA685060_P_NODE_5440_length_412_cov_1.035398_g5350_i0 PRJNA685060 5440 412 1.035398 4.26583976 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 57.4 1.79e-6   NR MBW1811625.1 2026735 g5350 i0 56.8 0.269417475728155 37 16 26.9 0 409 299 206 242 MBW1811625.1 calcium-binding EGF-like domain-containing protein [Deltaproteobacteria bacterium] diamond 111 57.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32843246 32843246 PRJNA685060_P_NODE_8620_length_324_cov_0.900398_g8530_i0 PRJNA685060 8620 324 0.900398 2.91728952 Myxococcia 32015 Bacteria Bacteria 70.1 5.37e-12   NR MBE2253089.1 1929279 g8530 i0 45.8 2.36111111111111 83 41 76.9 1 75 323 4 82 MBE2253089.1 NAD(P)H-binding protein [Myxococcus sp.] diamond 765 70.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;