RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA685060" and tax_phylum = "Kitrinoviricota"

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tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJNA685060 · 9 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1942146 1942146 PRJNA685060_P_NODE_2042_length_689_cov_2.525974_g1955_i0 PRJNA685060 2042 689 2.525974 17.40396086 Alphavirus getah 3426303 Viruses Viruses 1256 0   NTclustered gi|116878336|gb|EF011023.1| 97469 g1955 i0 99.565 100.00145137881 689 3 100 0 1 689 8575 7887 Alphavirus M1, complete genome blastn 68901 1256 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Togaviridae Alphavirus Alphavirus getah
2451304 2451304 PRJNA685060_P_NODE_10062_length_297_cov_1.937500_g9972_i0 PRJNA685060 10062 297 1.9375 5.754375 Alphavirus 11019 Viruses Viruses 549 8.029999999999997e-152   NTclustered gi|157734228|gb|EU015061.1| 59300 g9972 i0 100 99.996632996633 297 0 100 0 1 297 4824 4528 Getah virus strain M1, complete genome blastn 29699 549 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Togaviridae Alphavirus Alphavirus getah
8829004 8829004 PRJNA685060_P_NODE_47_length_2725_cov_3.756033_g39_i0 PRJNA685060 47 2725 3.756033 102.35189925 Alphavirus 11019 Viruses Viruses 5011 0   NTclustered gi|157734228|gb|EU015061.1| 59300 g39 i0 99.853 100.10128440367 2725 4 100 0 1 2725 7814 5090 Getah virus strain M1, complete genome blastn 272776 5011 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Togaviridae Alphavirus Alphavirus getah
16478868 16478868 PRJNA685060_P_NODE_33_length_2964_cov_4.837426_g27_i0 PRJNA685060 33 2964 4.837426 143.38130664 Alphavirus 11019 Viruses Viruses 5435 0   NTclustered gi|157734228|gb|EU015061.1| 59300 g27 i0 99.764 99.9038461538462 2964 7 100 0 1 2964 11456 8493 Getah virus strain M1, complete genome blastn 296115 5452 0.996881878209831 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Togaviridae Alphavirus Alphavirus getah
17753876 17753876 PRJNA685060_P_NODE_17954_length_206_cov_4.120301_g17864_i0 PRJNA685060 17954 206 4.120301 8.48782006 Alphavirus 11019 Viruses Viruses 375 9.41e-100   NTclustered gi|125711102|gb|EF375823.1| 59300 g17864 i0 99.517 100.519417475728 207 0 100 1 1 206 399 193 Getah virus strain M1 3' UTR blastn 20707 375 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Togaviridae Alphavirus Alphavirus getah
19027762 19027762 PRJNA685060_P_NODE_3335_length_540_cov_1.813704_g3245_i0 PRJNA685060 3335 540 1.813704 9.7940016 Alphavirus 11019 Viruses Viruses 998 0   NTclustered gi|157734228|gb|EU015061.1| 59300 g3245 i0 100 100 540 0 100 0 1 540 3058 2519 Getah virus strain M1, complete genome blastn 54000 998 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Togaviridae Alphavirus Alphavirus getah
21578248 21578248 PRJNA685060_P_NODE_12977_length_255_cov_2.038462_g12887_i0 PRJNA685060 12977 255 2.038462 5.1980781 Alphavirus 11019 Viruses Viruses 466 6.98e-127   NTclustered gi|1013288946|dbj|LC079087.1| 59300 g12887 i0 99.608 100 255 1 100 0 1 255 5046 4792 Getah virus genomic RNA, complete genome, strain: MI-110-C2 blastn 25500 466 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Togaviridae Alphavirus Alphavirus getah
22853447 22853447 PRJNA685060_P_NODE_1458_length_823_cov_1.832000_g1379_i0 PRJNA685060 1458 823 1.832 15.07736 Alphavirus 11019 Viruses Viruses 1515 0   NTclustered gi|157734228|gb|EU015061.1| 59300 g1379 i0 99.878 100 823 1 100 0 1 823 3881 3059 Getah virus strain M1, complete genome blastn 82300 1515 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Togaviridae Alphavirus Alphavirus getah
24128049 24128049 PRJNA685060_P_NODE_9639_length_305_cov_1.750000_g9549_i0 PRJNA685060 9639 305 1.75 5.3375 Alphavirus 11019 Viruses Viruses 564 2.95e-156   NTclustered gi|157734228|gb|EU015061.1| 59300 g9549 i0 100 100 305 0 100 0 1 305 4324 4020 Getah virus strain M1, complete genome blastn 30500 564 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Togaviridae Alphavirus Alphavirus getah

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;