RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA685060" and tax_phylum = "Acidobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA685060 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18518280 18518280 PRJNA685060_P_NODE_5515_length_409_cov_3.601190_g5425_i0 PRJNA685060 5515 409 3.60119 14.7288671 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 54.7 0.011   NTclustered gi|2874253939|emb|OY970264.1| 171953 g5425 i0 100 0.0709046454767726 29 0 7 0 375 403 2853962 2853990 MAG: uncultured Acidobacteriota bacterium isolate MFD03726.bin.c.8 genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
29576632 29576632 PRJNA685060_P_NODE_2930_length_578_cov_1.401980_g2840_i0 PRJNA685060 2930 578 1.40198 8.1034444 Acidobacteriota bacterium 1978231 Bacteria Bacteria 52.4 3.06e-4   NR MCY3926973.1 1978231 g2840 i0 30.8 0.742214532871972 143 84 68.5 4 547 152 181 319 MCY3926973.1 hypothetical protein [Acidobacteriota bacterium] diamond 429 52.4 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;