RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA685060" and tax_kingdom = "Thermotogati"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA685060 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3217038 3217038 PRJNA685060_P_NODE_16743_length_243_cov_0.905882_g16653_i0 PRJNA685060 16743 243 0.905882 2.20129326 Deinococcus wulumuqiensis 980427 Bacteria Bacteria 289 1.53e-73   NTclustered gi|1435316362|gb|CP031158.1| 980427 g16653 i0 88.066 4.87654320987654 243 29 100 0 1 243 287245 287003 Deinococcus wulumuqiensis strain NEB 479 chromosome, complete genome blastn 1185 289 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus wulumuqiensis
31852123 31852123 PRJNA685060_P_NODE_15497_length_246_cov_0.890173_g15407_i0 PRJNA685060 15497 246 0.890173 2.18982558 Deinococcus antarcticus 1298767 Bacteria Bacteria 87.4 1.65e-18   NR WP_380078763.1 1298767 g15407 i0 97.7 0.536585365853659 44 1 53.7 0 133 2 1 44 WP_380078763.1 hypothetical protein [Deinococcus antarcticus] diamond 132 87.4 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus antarcticus
31915483 31915483 PRJNA685060_P_NODE_13377_length_251_cov_0.865169_g13287_i0 PRJNA685060 13377 251 0.865169 2.17157419 Deinococcus marmoris 249408 Bacteria Bacteria 122 2.48e-30   NR WP_368482861.1 249408 g13287 i0 76.6 1.8406374501992 77 18 92 0 231 1 123 199 WP_368482861.1 ABC transporter substrate-binding protein [Deinococcus marmoris] diamond 462 122 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus marmoris

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;