RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA685060", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 1 ✖

tax_kingdom 1

  • Pseudomonadati · 1 ✖

bioproject 1

  • PRJNA685060 · 1 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27398394 27398394 PRJNA685060_P_NODE_14923_length_247_cov_1.206897_g14833_i0 PRJNA685060 14923 247 1.206897 2.98103559 Sulfurospirillaceae bacterium 2932625 Bacteria Bacteria 98.6 8.91e-22   NR MDD2383359.1 2932625 g14833 i0 62.5 1.93117408906883 80 27 97.2 1 8 247 523 599 MDD2383359.1 malate synthase G [Sulfurospirillaceae bacterium] diamond 477 98.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae   Sulfurospirillaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;