RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA685060", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA685060 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27650997 27650997 PRJNA685060_P_NODE_11744_length_272_cov_1.633166_g11654_i0 PRJNA685060 11744 272 1.633166 4.44221152 Ktedonobacteraceae bacterium 2740538 Bacteria Bacteria 43.9 0.0194   NR MEO7019732.1 2740538 g11654 i0 37.9 0.727941176470588 66 32 69.5 2 269 81 16 75 MEO7019732.1 hypothetical protein [Ktedonobacteraceae bacterium] diamond 198 43.9 1 Bacteria   Bacillati Chloroflexota Ktedonobacteria Ktedonobacterales Ktedonobacteraceae   Ktedonobacteraceae bacterium
31516178 31516178 PRJNA685060_P_NODE_14716_length_248_cov_0.880000_g14626_i0 PRJNA685060 14716 248 0.88 2.1824 Bacillati 1783272 Bacteria Bacteria 55.1 7.88e-7   NR HEY90960.1 2026734 g14626 i0 65.5 12.1572580645161 58 13 65.3 2 245 84 38 92 HEY90960.1 50S ribosomal protein L2 [Dehalococcoidia bacterium] diamond 3015 55.1 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
31978752 31978752 PRJNA685060_P_NODE_7138_length_356_cov_2.971731_g7048_i0 PRJNA685060 7138 356 2.971731 10.57936236 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 45.4 0.00644   NR HEY8491018.1 2026734 g7048 i0 31.8 3 85 52 67.4 2 65 304 5 88 HEY8491018.1 Hsp20/alpha crystallin family protein [Dehalococcoidia bacterium] diamond 1068 45.4 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;