RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where bioproject = "PRJNA685060", tax_clade = "Sar" and tax_phylum = "Oomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 11 ✖

tax_clade 1

  • Sar · 11 ✖

bioproject 1

  • PRJNA685060 · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8319227 8319227 PRJNA685060_P_NODE_10867_length_285_cov_1.452830_g10777_i0 PRJNA685060 10867 285 1.45283 4.1405655 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 149 5.2e-41   NR RHY19608.1 112090 g10777 i0 68.1 6.92631578947368 94 30 98.9 0 284 3 175 268 RHY19608.1 hypothetical protein DYB25_003243 [Aphanomyces astaci] diamond 1974 150 0.993333333333333 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
9594755 9594755 PRJNA685060_P_NODE_15808_length_245_cov_0.895349_g15718_i0 PRJNA685060 15808 245 0.895349 2.19360505 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 176 1.26e-39   NTclustered gi|695382201|ref|XM_009519030.1| 67593 g15718 i0 82.99 13.665306122449 194 33 79 0 52 245 289 96 Phytophthora sojae hypothetical protein mRNA blastn 3348 176 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
10104661 10104661 PRJNA685060_P_NODE_10428_length_292_cov_0.867580_g10338_i0 PRJNA685060 10428 292 0.86758 2.5333336 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 63.5 3.37e-9   NR RHY78209.1 112090 g10338 i0 72.7 11.6506849315068 44 10 45.2 1 160 291 1221 1262 RHY78209.1 hypothetical protein DYB38_002210 [Aphanomyces astaci] diamond 3402 63.5 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
14695103 14695103 PRJNA685060_P_NODE_1392_length_843_cov_1.928571_g1316_i0 PRJNA685060 1392 843 1.928571 16.25785353 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 57.4 3.44e-5   NR KAH9113010.1 100861 g1316 i0 26.7 0.839857651245552 236 145 76.2 10 842 201 637 866 KAH9113010.1 hypothetical protein AeMF1_012740 [Aphanomyces euteiches] diamond 708 57.4 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
26650446 26650446 PRJNA685060_P_NODE_13681_length_250_cov_1.525424_g13591_i0 PRJNA685060 13681 250 1.525424 3.81356 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 63.2 3.77e-11   NR XP_008880552.1 157072 g13591 i0 70 4.2 50 14 60 1 248 99 3 51 XP_008880552.1 hypothetical protein H310_14464 [Aphanomyces invadans] diamond 1050 63.5 0.995275590551181 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
26829168 26829168 PRJNA685060_P_NODE_11961_length_269_cov_1.571429_g11871_i0 PRJNA685060 11961 269 1.571429 4.22714401 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 42.7 0.048   NR KAH9163861.1 100861 g11871 i0 29.4 0.758364312267658 68 47 75.8 1 60 263 171 237 KAH9163861.1 hypothetical protein LEN26_000308 [Aphanomyces euteiches] diamond 204 42.7 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
27346852 27346852 PRJNA685060_P_NODE_10343_length_293_cov_1.400000_g10253_i0 PRJNA685060 10343 293 1.4 4.102 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.0329   NR CCI49469.1 65357 g10253 i0 41.1 0.921501706484642 56 31 55.3 1 170 9 96 151 CCI49469.1 unnamed protein product [Albugo candida] diamond 270 43.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
27662627 27662627 PRJNA685060_P_NODE_9004_length_316_cov_1.753086_g8914_i0 PRJNA685060 9004 316 1.753086 5.53975176 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 147 4.99e-39   NR TMW69171.1 41045 g8914 i0 63.8 6.96835443037975 105 38 99.7 0 315 1 208 312 TMW69171.1 hypothetical protein Poli38472_001327 [Pythium oligandrum] diamond 2202 147 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
30619248 30619248 PRJNA685060_P_NODE_4873_length_437_cov_2.486264_g4783_i0 PRJNA685060 4873 437 2.486264 10.86497368 Peronosclerospora sorghi 230839 SAR_Eukaryotes SAR_Eukaryotes 77.8 2.21e-15   NR KAI9906613.1 230839 g4783 i0 59.1 4.40045766590389 115 43 78.9 1 83 427 1 111 KAI9906613.1 hypothetical protein PsorP6_016508 [Peronosclerospora sorghi] diamond 1923 77.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronosclerospora Peronosclerospora sorghi
31073343 31073343 PRJNA685060_P_NODE_7455_length_349_cov_1.112319_g7365_i0 PRJNA685060 7455 349 1.112319 3.88199331 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 83.6 4.94e-16   NR KAF0720512.1 120398 g7365 i0 59.3 2.93123209169054 113 44 97.1 1 346 8 272 382 KAF0720512.1 hypothetical protein As57867_000231 [Aphanomyces stellatus] diamond 1023 83.6 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
31673947 31673947 PRJNA685060_P_NODE_6117_length_387_cov_1.535032_g6027_i0 PRJNA685060 6117 387 1.535032 5.94057384 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 133 4.16e-33   NR OQR88439.1 74557 g6027 i0 55.5 9.15503875968992 119 53 92.2 0 372 16 476 594 OQR88439.1 glutamine-dependent NAD(+) synthetase [Thraustotheca clavata] diamond 3543 134 0.992537313432836 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;