RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA685060", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA685060 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3217023 3217023 PRJNA685060_P_NODE_14803_length_248_cov_0.880000_g14713_i0 PRJNA685060 14803 248 0.88 2.1824 Cryptocaryon irritans 153251 SAR_Eukaryotes SAR_Eukaryotes 265 2.6499999999999997e-66   NTclustered gi|2431531581|ref|NC_070360.1| 153251 g14713 i0 86.345 94.1935483870968 249 27 100 4 1 248 5950 6192 Cryptocaryon irritans mitochondrion, complete genome blastn 23360 265 1 Eukaryota Sar   Ciliophora       Cryptocaryon Cryptocaryon irritans
27599520 27599520 PRJNA685060_P_NODE_11204_length_281_cov_0.942308_g11114_i0 PRJNA685060 11204 281 0.942308 2.64788548 Paramecium 5884 SAR_Eukaryotes SAR_Eukaryotes 137 5.47e-39   NR CAD8080700.1 5886 g11114 i0 70.9 3.74733096085409 86 25 91.8 0 23 280 1 86 CAD8080700.1 unnamed protein product [Paramecium primaurelia] diamond 1053 137 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium primaurelia
30398656 30398656 PRJNA685060_P_NODE_16073_length_244_cov_3.602339_g15983_i0 PRJNA685060 16073 244 3.602339 8.78970716 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 67.4 3.01e-12   NR CDW83169.1 5949 g15983 i0 52.1 1.63524590163934 71 33 86.1 1 215 6 3 73 CDW83169.1 UNKNOWN [Stylonychia lemnae] diamond 399 67.4 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;