RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA685060", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA685060 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
666191 666191 PRJNA685060_P_NODE_4221_length_473_cov_1.032500_g4131_i0 PRJNA685060 4221 473 1.0325 4.883725 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 142 1.21e-37   NR XP_067069017.1 117008 g4131 i0 49.7 16.7251585623679 151 76 95.8 0 455 3 35 185 XP_067069017.1 26s proteasome regulatory subunit S10B [Cryptosporidium andersoni] diamond 7911 142 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium andersoni
1942164 1942164 PRJNA685060_P_NODE_3942_length_490_cov_1.923261_g3852_i0 PRJNA685060 3942 490 1.923261 9.4239789 Eimeria mitis 44415 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.048   NTclustered gi|916504497|ref|XM_013497466.1| 44415 g3852 i0 100 0.0571428571428571 28 0 6 0 89 116 170 143 Eimeria mitis uncharacterized protein (EMH_0057440), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria mitis
4494159 4494159 PRJNA685060_P_NODE_8964_length_317_cov_1.200820_g8874_i0 PRJNA685060 8964 317 1.20082 3.8065994 Eimeria necatrix 51315 SAR_Eukaryotes SAR_Eukaryotes 65.8 3.81e-6   NTclustered gi|921132853|ref|XM_013585508.1| 51315 g8874 i0 100 6.77917981072555 35 0 11 0 1 35 2265 2299 Eimeria necatrix acyltransferase, putative partial mRNA blastn 2149 65.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria necatrix
12655493 12655493 PRJNA685060_P_NODE_5950_length_393_cov_1.734375_g5860_i0 PRJNA685060 5950 393 1.734375 6.81609375 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 222 2.71e-53   NTclustered gi|83317698|ref|XM_726182.1| 5861 g5860 i0 78.761 39.295165394402 339 66 85 6 18 353 777 442 Plasmodium yoelii glyceraldehyde-3-phosphate dehydrogenase (PY17X_1330200), partial mRNA blastn 15443 222 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium yoelii
14695161 14695161 PRJNA685060_P_NODE_612_length_1180_cov_7.449864_g566_i0 PRJNA685060 612 1180 7.449864 87.9083952 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 784 0   NTclustered gi|124806844|ref|XM_001350811.1| 36329 g566 i0 79.471 89.0118644067797 1135 209 95 20 29 1151 9 1131 Plasmodium falciparum 3D7 actin I (PF3D7_1246200), partial mRNA blastn 105034 784 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
21068556 21068556 PRJNA685060_P_NODE_15017_length_247_cov_0.885057_g14927_i0 PRJNA685060 15017 247 0.885057 2.18609079 Plasmodium malariae 5858 SAR_Eukaryotes SAR_Eukaryotes 195 3.51e-45   NTclustered gi|1624459228|ref|XM_029008781.1| 5858 g14927 i0 82.018 4.64777327935223 228 41 92 0 5 232 6420 6193 Plasmodium malariae pre-mRNA-processing-splicing factor 8, putative (PRPF8), partial mRNA blastn 1148 195 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium malariae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;