RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA685060", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 2 ✖

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA685060 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9594805 9594805 PRJNA685060_P_NODE_5828_length_398_cov_1.344615_g5738_i0 PRJNA685060 5828 398 1.344615 5.3515677 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 157 4.9e-45   NR XP_004368090.1 1257118 g5738 i0 56.8 6.79899497487437 132 53 96.5 1 5 388 38 169 XP_004368090.1 ribosomal RNA large subunit methyltransferase J, putative [Acanthamoeba castellanii str. Neff] diamond 2706 157 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31895475 31895475 PRJNA685060_P_NODE_11737_length_272_cov_1.798995_g11647_i0 PRJNA685060 11737 272 1.798995 4.8932664 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 88.2 1.96e-19   NR QHU79723.1 5756 g11647 i0 60 25.8970588235294 70 28 77.2 0 61 270 118 187 QHU79723.1 NADH dehydrogenase subunit 5, partial [Acanthamoeba sp.] diamond 7044 89 0.991011235955056 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;