RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA685060" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA685060 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9594805 9594805 PRJNA685060_P_NODE_5828_length_398_cov_1.344615_g5738_i0 PRJNA685060 5828 398 1.344615 5.3515677 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 157 4.9e-45   NR XP_004368090.1 1257118 g5738 i0 56.8 6.79899497487437 132 53 96.5 1 5 388 38 169 XP_004368090.1 ribosomal RNA large subunit methyltransferase J, putative [Acanthamoeba castellanii str. Neff] diamond 2706 157 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14695094 14695094 PRJNA685060_P_NODE_12852_length_257_cov_1.255435_g12762_i0 PRJNA685060 12852 257 1.255435 3.22646795 Cavenderia fasciculata 261658 Evosea other_Eukaryota 142 2.1999999999999998e-38   NR XP_004351430.1 261658 g12762 i0 75.3 5.95330739299611 85 21 99.2 0 255 1 128 212 XP_004351430.1 isocitrate dehydrogenase [Cavenderia fasciculata] diamond 1530 142 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
23619093 23619093 PRJNA685060_P_NODE_9679_length_305_cov_1.198276_g9589_i0 PRJNA685060 9679 305 1.198276 3.6547418 Dictyostelium purpureum 5786 Evosea other_Eukaryota 108 5.98e-19   NTclustered gi|330805290|ref|XM_003290570.1| 5786 g9589 i0 83.929 0.947540983606557 112 18 37 0 13 124 2425 2536 Dictyostelium purpureum ribonucleotide reductase large subunit (DICPUDRAFT_49298), mRNA blastn 289 108 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
26607207 26607207 PRJNA685060_P_NODE_5501_length_410_cov_1.367953_g5411_i0 PRJNA685060 5501 410 1.367953 5.6086073 Heterostelium album PN5 2086695 Evosea other_Eukaryota 54.3 1.82e-5   NR XP_020427746.1 670386 g5411 i0 32.2 0.658536585365854 90 61 65.9 0 286 17 58 147 XP_020427746.1 hypothetical protein PPL_11118 [Heterostelium album PN500] diamond 270 54.3 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
30283795 30283795 PRJNA685060_P_NODE_14392_length_249_cov_0.875000_g14302_i0 PRJNA685060 14392 249 0.875 2.17875 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 47.4 8.9e-4   NR XP_008859393.1 1076696 g14302 i0 41.5 2.20481927710843 65 37 77.1 1 210 19 234 298 XP_008859393.1 TolA protein, putative [Entamoeba nuttalli P19] diamond 549 47.8 0.99163179916318 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba nuttalli
31895475 31895475 PRJNA685060_P_NODE_11737_length_272_cov_1.798995_g11647_i0 PRJNA685060 11737 272 1.798995 4.8932664 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 88.2 1.96e-19   NR QHU79723.1 5756 g11647 i0 60 25.8970588235294 70 28 77.2 0 61 270 118 187 QHU79723.1 NADH dehydrogenase subunit 5, partial [Acanthamoeba sp.] diamond 7044 89 0.991011235955056 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;