RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA683902" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA683902 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5768960 5768960 PRJNA683902_S_NODE_32685_length_169_cov_1.750000_g32241_i0 PRJNA683902 32685 169 1.75 2.9575 uncultured Desulfobacterales bacterium HF 246132 Bacteria Bacteria 74.3 2.86e-15   NR ADI17936.1 710741 g32241 i0 68.6 0.905325443786982 51 16 90.5 0 169 17 53 103 ADI17936.1 hypothetical protein [uncultured Desulfobacterales bacterium HF0200_07G10] diamond 153 74.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     uncultured Desulfobacterales bacterium HF0200_07G10
10104261 10104261 PRJNA683902_S_NODE_33488_length_166_cov_2.713178_g33044_i0 PRJNA683902 33488 166 2.713178 4.50387548 Pseudomonadati 3379134 Bacteria Bacteria 189 1.0199999999999999e-43   NTclustered gi|2893358418|emb|OZ220710.1| 2202153 g33044 i0 87.5 70.0843373493976 168 16 100 5 1 166 2286663 2286827 MAG: Thermodesulfobacteriota bacterium isolate dce1034a-8f23-488c-aa07-39e6c80a0035 genome assembly, chromosome: 1 blastn 11634 189 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
13929049 13929049 PRJNA683902_S_NODE_10891_length_418_cov_22.451444_g10447_i0 PRJNA683902 10891 418 22.451444 93.84703592 Pseudomonadati 3379134 Bacteria Bacteria 436 9.5e-118   NTclustered gi|470483506|ref|NR_076596.1| 225194 g10447 i0 85.476 271.772727272727 420 59 100 2 1 418 2534 2953 Geobacter bemidjiensis strain Bem 23S ribosomal RNA gene, complete sequence blastn 113601 436 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Citrifermentans Citrifermentans bemidjiense
19792383 19792383 PRJNA683902_S_NODE_38776_length_153_cov_0.931034_g38332_i0 PRJNA683902 38776 153 0.931034 1.42448202 Syntrophotalea acetylenica 29542 Bacteria Bacteria 52.8 0.013   NTclustered gi|1109565244|gb|CP015455.1| 29542 g38332 i0 100 0.549019607843137 28 0 18 0 103 130 139 112 Syntrophotalea acetylenica strain DSM 3246 chromosome, complete genome blastn 84 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Syntrophotaleaceae Syntrophotalea Syntrophotalea acetylenica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;