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contig_metadata

23 rows where bioproject = "PRJNA683902" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 23 ✖

tax_clade 1

bioproject 1

  • PRJNA683902 · 23 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
665500 665500 PRJNA683902_S_NODE_8961_length_520_cov_10.873706_g8536_i0 PRJNA683902 8961 520 10.873706 56.5432712 Pythium monospermum 92964 SAR_Eukaryotes SAR_Eukaryotes 815 0   NTclustered gi|33520250|gb|AY273995.1| 92964 g8536 i0 95.85 96.6076923076923 506 18 97 3 1 504 19 523 Pythium monospermum large subunit ribosomal RNA gene, partial sequence blastn 50236 815 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium monospermum
5003849 5003849 PRJNA683902_S_NODE_26524_length_194_cov_2.560510_g26080_i0 PRJNA683902 26524 194 2.56051 4.9673894 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 101 7.85e-24   NR DAZ96004.1 4803 g26080 i0 81 12.5103092783505 63 12 97.4 0 193 5 107 169 DAZ96004.1 TPA: hypothetical protein N0F65_009305 [Lagenidium giganteum] diamond 2427 102 0.990196078431373 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
5768860 5768860 PRJNA683902_S_NODE_20565_length_233_cov_2.306122_g20121_i0 PRJNA683902 20565 233 2.306122 5.37326426 uncultured Oomycota 179533 SAR_Eukaryotes SAR_Eukaryotes 425 1.07e-114   NTclustered gi|575503194|gb|KF750352.1| 179533 g20121 i0 99.571 99.6781115879828 233 1 100 0 1 233 280 48 Uncultured oomycete clone A2g8796 large subunit ribosomal RNA gene, partial sequence blastn 23225 425 1 Eukaryota Sar   Oomycota         uncultured Oomycota
7553629 7553629 PRJNA683902_S_NODE_39826_length_150_cov_3.522124_g39382_i0 PRJNA683902 39826 150 3.522124 5.283186 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 255 8.680000000000001e-64   NTclustered gi|573007521|gb|HQ643388.2| 126845 g39382 i0 97.351 100.44 151 2 99 2 2 150 1438 1288 Phytopythium megacarpum voucher CBS112351 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 15066 255 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Phytopythium Phytopythium megacarpum
9593932 9593932 PRJNA683902_S_NODE_27708_length_188_cov_3.066225_g27264_i0 PRJNA683902 27708 188 3.066225 5.764503 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 115 2.03e-21   NTclustered gi|673019759|ref|XM_008865619.1| 157072 g27264 i0 83.74 14.7234042553191 123 18 65 2 64 185 127 248 Aphanomyces invadans 40S ribosomal protein S23 mRNA blastn 2768 115 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
10104047 10104047 PRJNA683902_S_NODE_23588_length_211_cov_2.448276_g23144_i0 PRJNA683902 23588 211 2.448276 5.16586236 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 285 1.68e-72   NTclustered gi|2440150|emb|X75631.1| 4788 g23144 i0 91.08 99.0284360189574 213 16 100 3 1 211 2927 2716 P.megasperma gene for 28S ribosomal RNA blastn 20895 285 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megasperma
10869255 10869255 PRJNA683902_S_NODE_24949_length_203_cov_2.114458_g24505_i0 PRJNA683902 24949 203 2.114458 4.29234974 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 333 5.639999999999999e-87   NTclustered gi|7658194|gb|AF119587.1| 120398 g24505 i0 96.517 90.64039408867 201 7 99 0 3 203 358 558 Aphanomyces stellatus strain AR 51 large subunit ribosomal RNA gene, partial sequence blastn 18400 333 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
11379099 11379099 PRJNA683902_S_NODE_31169_length_174_cov_2.160584_g30725_i0 PRJNA683902 31169 174 2.160584 3.75941616 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 95.5 3.94e-21   NR KAL4159755.1 164328 g30725 i0 86.8 18.5 53 7 91.4 0 159 1 1234 1286 KAL4159755.1 hypothetical protein PRNP1_000328 [Phytophthora ramorum] diamond 3219 95.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
12654840 12654840 PRJNA683902_S_NODE_24910_length_203_cov_3.265060_g24466_i0 PRJNA683902 24910 203 3.26506 6.6280718 Pythiales 121069 SAR_Eukaryotes SAR_Eukaryotes 368 1.55e-97   NTclustered gi|531037406|gb|AY598692.2| 172234 g24466 i0 99.505 99.512315270936 202 1 99 0 2 203 4041 3840 Pythium grandisporangium strain CBS 286.79 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 20201 368 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium grandisporangium
18517280 18517280 PRJNA683902_S_NODE_14495_length_316_cov_2.896057_g14051_i0 PRJNA683902 14495 316 2.896057 9.15154012 Pythium grandisporangium 172234 SAR_Eukaryotes SAR_Eukaryotes 555 1.8499999999999999e-153   NTclustered gi|1042782939|gb|KT886041.1| 172234 g14051 i0 98.418 99.9240506329114 316 4 100 1 1 316 951 637 Pythium grandisporangium voucher CCIBt 4073 18S ribosomal RNA gene, partial sequence blastn 31576 555 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium grandisporangium
18517487 18517487 PRJNA683902_S_NODE_36795_length_157_cov_2.800000_g36351_i0 PRJNA683902 36795 157 2.8 4.396 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 154 3.45e-33   NTclustered gi|698801103|ref|XM_009835279.1| 112090 g36351 i0 84.713 99.1528662420382 157 20 99 4 1 155 705 859 Aphanomyces astaci adenosylhomocysteinase 2 mRNA blastn 15567 154 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
19027250 19027250 PRJNA683902_S_NODE_30255_length_177_cov_3.871429_g29811_i0 PRJNA683902 30255 177 3.871429 6.85242933 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 281 1.75e-71   NTclustered gi|51235482|gb|AY598628.1| 82932 g29811 i0 95.48 100.011299435028 177 6 99 2 1 175 1809 1633 Pythium arrhenomanes strain CBS 324.62 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17702 281 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium arrhenomanes
19792362 19792362 PRJNA683902_S_NODE_36256_length_158_cov_5.619835_g35812_i0 PRJNA683902 36256 158 5.619835 8.8793393 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 191 2.65e-44   NTclustered gi|813199067|ref|XR_001099866.1| 695850 g35812 i0 88.679 38.7658227848101 159 14 99 4 2 158 1540 1696 Saprolegnia parasitica CBS 223.65 28S ribosomal RNA rRNA blastn 6125 191 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
25402110 25402110 PRJNA683902_S_NODE_32860_length_168_cov_3.015267_g32416_i0 PRJNA683902 32860 168 3.015267 5.06564856 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 132 1.7600000000000002e-26   NTclustered gi|189084851|gb|BT032382.1| 4784 g32416 i0 81.646 16.1190476190476 158 29 94 0 11 168 407 250 Phytophthora capsici clone CBOU49-E03 mRNA sequence blastn 2708 132 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
26892556 26892556 PRJNA683902_S_NODE_19441_length_244_cov_1.869565_g18997_i0 PRJNA683902 19441 244 1.869565 4.5617386 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 93.2 6.6500000000000005e-22   NR KAJ0410394.1 114742 g18997 i0 62.7 2.76639344262295 75 27 92.2 1 242 18 82 155 KAJ0410394.1 hypothetical protein P43SY_002726 [Pythium insidiosum] diamond 675 93.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
27914913 27914913 PRJNA683902_S_NODE_30065_length_178_cov_2.127660_g29621_i0 PRJNA683902 30065 178 2.12766 3.7872348 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 91.7 1.9900000000000003e-21   NR KAF0718998.1 120398 g29621 i0 78.2 25.5168539325843 55 12 92.7 0 167 3 32 86 KAF0718998.1 hypothetical protein As57867_001340 [Aphanomyces stellatus] diamond 4542 92 0.996739130434783 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
28546780 28546780 PRJNA683902_S_NODE_29567_length_180_cov_1.727273_g29123_i0 PRJNA683902 29567 180 1.727273 3.1090914 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 54.7 3.78e-8   NR RHY01079.1 112090 g29123 i0 96 2.5 25 1 41.7 0 1 75 38 62 RHY01079.1 hypothetical protein DYB25_010126, partial [Aphanomyces astaci] diamond 450 54.7 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
28704534 28704534 PRJNA683902_S_NODE_27427_length_190_cov_1.111111_g26983_i0 PRJNA683902 27427 190 1.111111 2.1111109 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 87 7.53e-20   NR RHY74090.1 112090 g26983 i0 69.8 3.97894736842105 63 18 97.9 1 188 3 15 77 RHY74090.1 hypothetical protein DYB30_004665 [Aphanomyces astaci] diamond 756 87 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
30156732 30156732 PRJNA683902_S_NODE_20272_length_236_cov_1.452261_g19828_i0 PRJNA683902 20272 236 1.452261 3.42733596 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 156 7.339999999999999e-43   NR RHZ16721.1 112090 g19828 i0 89.7 7.93220338983051 78 8 99.2 0 236 3 149 226 RHZ16721.1 hypothetical protein DYB31_004085 [Aphanomyces astaci] diamond 1872 156 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
30378538 30378538 PRJNA683902_S_NODE_19572_length_243_cov_1.422330_g19128_i0 PRJNA683902 19572 243 1.42233 3.4562619 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 138 2.95e-39   NR KAL0583279.1 65357 g19128 i0 76.5 15.8395061728395 81 19 100 0 1 243 1 81 KAL0583279.1 hypothetical protein ABG067_006780 [Albugo candida] diamond 3849 139 0.992805755395683 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
30555923 30555923 PRJNA683902_S_NODE_29493_length_180_cov_2.776224_g29049_i0 PRJNA683902 29493 180 2.776224 4.9972032 Albugo laibachii Nc14 890382 SAR_Eukaryotes SAR_Eukaryotes 103 2.67e-25   NR CCA19147.1 890382 g29049 i0 76.7 3 60 14 100 0 1 180 91 150 CCA19147.1 40S ribosomal protein S4 putative [Albugo laibachii Nc14] diamond 540 103 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
32338667 32338667 PRJNA683902_S_NODE_27019_length_192_cov_1.316129_g26575_i0 PRJNA683902 27019 192 1.316129 2.52696768 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 114 4.28e-30   NR TMW65496.1 41045 g26575 i0 76.2 14.59375 63 15 98.4 0 190 2 128 190 TMW65496.1 hypothetical protein Poli38472_008138 [Pythium oligandrum] diamond 2802 115 0.991304347826087 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
32863240 32863240 PRJNA683902_S_NODE_20240_length_236_cov_2.648241_g19796_i0 PRJNA683902 20240 236 2.648241 6.24984876 [Pythium] brassicae (nom. inval.) 1485010 SAR_Eukaryotes SAR_Eukaryotes 138 9.67e-39   NR TYZ63780.1 1485010 g19796 i0 80.5 2.94915254237288 77 15 97.9 0 4 234 65 141 TYZ63780.1 hypothetical protein PybrP1_001840 [[Pythium] brassicae (nom. inval.)] diamond 696 138 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;