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contig_metadata

13 rows where bioproject = "PRJNA683902", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 13 ✖

tax_phylum 1

  • Myxococcota · 13 ✖

tax_kingdom 1

bioproject 1

  • PRJNA683902 · 13 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1175506 1175506 PRJNA683902_S_NODE_29241_length_181_cov_2.722222_g28797_i0 PRJNA683902 29241 181 2.722222 4.92722182 Sorangium 39643 Bacteria Bacteria 285 1.39e-72   NTclustered gi|1566495190|gb|CP012670.1| 56 g28797 i0 95.028 153.39226519337 181 9 100 0 1 181 2994958 2994778 Sorangium cellulosum strain So ceGT47 chromosome, complete genome blastn 27764 285 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
5003939 5003939 PRJNA683902_S_NODE_30384_length_177_cov_1.578571_g29940_i0 PRJNA683902 30384 177 1.578571 2.79407067 Haliangium 162027 Bacteria Bacteria 185 1.4099999999999999e-42   NTclustered gi|470485361|ref|NR_076697.1| 80816 g29940 i0 86.747 136.64406779661 166 22 94 0 3 168 1776 1611 Haliangium ochraceum strain SMP-2 23S ribosomal RNA gene, complete sequence blastn 24186 185 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae Haliangium Haliangium ochraceum
7043800 7043800 PRJNA683902_S_NODE_10606_length_430_cov_17.826972_g10164_i0 PRJNA683902 10606 430 17.826972 76.6559796 Labilithrix luteola 1391654 Bacteria Bacteria 516 1.22e-141   NTclustered gi|913610804|gb|CP012333.1| 1391654 g10164 i0 88.558 172.779069767442 437 35 100 15 1 430 7090066 7090494 Labilithrix luteola strain DSM 27648, complete genome blastn 74295 516 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
9593792 9593792 PRJNA683902_S_NODE_13508_length_337_cov_3.356667_g13064_i0 PRJNA683902 13508 337 3.356667 11.31196779 Pendulispora albinea 2741071 Bacteria Bacteria 405 2.12e-108   NTclustered gi|2698035964|gb|CP089984.1| 2741071 g13064 i0 88.462 157.347181008902 338 36 100 3 1 337 3589909 3590244 Pendulispora albinea strain MSr11954 chromosome, complete genome blastn 53026 405 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora albinea
10869361 10869361 PRJNA683902_S_NODE_37229_length_156_cov_2.705882_g36785_i0 PRJNA683902 37229 156 2.705882 4.22117592 Sandaracinus amylolyticus 927083 Bacteria Bacteria 191 2.61e-44   NTclustered gi|2183633570|gb|CP070225.1| 927083 g36785 i0 89.032 101.673076923077 155 15 98 2 1 153 9679246 9679092 Sandaracinus strain MSr10575 (SBSa001) chromosome, complete sequence blastn 15861 191 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus amylolyticus
15204029 15204029 PRJNA683902_S_NODE_22972_length_215_cov_2.584270_g22528_i0 PRJNA683902 22972 215 2.58427 5.5561805 Sorangium 39643 Bacteria Bacteria 381 2.1299999999999996e-101   NTclustered gi|1566478966|gb|CP012672.1| 56 g22528 i0 98.605 145.227906976744 215 3 100 0 1 215 3690327 3690541 Sorangium cellulosum strain So ce836 chromosome, complete genome blastn 31224 381 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
17243341 17243341 PRJNA683902_S_NODE_40014_length_150_cov_1.495575_g39570_i0 PRJNA683902 40014 150 1.495575 2.2433625 Minicystis rosea 888845 Bacteria Bacteria 172 8.99e-39   NTclustered gi|1127353251|gb|CP016211.1| 888845 g39570 i0 88.276 20.3733333333333 145 15 96 2 5 148 770557 770414 Minicystis rosea strain DSM 24000 chromosome, complete genome blastn 3056 172 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis rosea
23618242 23618242 PRJNA683902_S_NODE_35339_length_161_cov_1.540323_g34895_i0 PRJNA683902 35339 161 1.540323 2.47992003 Polyangium aurulentum 2567896 Bacteria Bacteria 171 3.54e-38   NTclustered gi|2235996827|gb|CP079217.1| 2567896 g34895 i0 85.802 61.6273291925466 162 21 100 2 1 161 443160 443000 Polyangium aurulentum strain SDU3-1 chromosome, complete genome blastn 9922 171 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium aurulentum
27398378 27398378 PRJNA683902_S_NODE_31763_length_172_cov_2.103704_g31319_i0 PRJNA683902 31763 172 2.103704 3.61837088 Myxococcaceae bacterium 2484252 Bacteria Bacteria 108 1.62e-26   NR RYZ13579.1 2484252 g31319 i0 91.2 0.994186046511628 57 5 99.4 0 172 2 104 160 RYZ13579.1 MAG: ABC-F family ATP-binding cassette domain-containing protein, partial [Myxococcaceae bacterium] diamond 171 108 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
28218942 28218942 PRJNA683902_S_NODE_39386_length_151_cov_2.807018_g38942_i0 PRJNA683902 39386 151 2.807018 4.23859718 Myxococcales bacterium 2026763 Bacteria Bacteria 41.6 0.0277   NR NRA06951.1 2026763 g38942 i0 50 0.635761589403974 32 16 63.6 0 43 138 314 345 NRA06951.1 MATE family efflux transporter [Myxococcales bacterium] diamond 96 41.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
28767461 28767461 PRJNA683902_S_NODE_32347_length_170_cov_2.052632_g31903_i0 PRJNA683902 32347 170 2.052632 3.4894744 Pseudomonadati 3379134 Bacteria Bacteria 49.3 6.69e-5   NR HVK87868.1 2212474 g31903 i0 44.2 3.86470588235294 52 29 91.8 0 4 159 257 308 HVK87868.1 HlyD family efflux transporter periplasmic adaptor subunit [Kofleriaceae bacterium] diamond 657 49.3 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
28882135 28882135 PRJNA683902_S_NODE_18068_length_259_cov_2.243243_g17624_i0 PRJNA683902 18068 259 2.243243 5.80999937 Myxococcota bacterium 2818507 Bacteria Bacteria 85.9 2.02e-17   NR MEM6992006.1 2818507 g17624 i0 67.2 1.41312741312741 61 20 70.7 0 3 185 342 402 MEM6992006.1 ABC transporter permease [Myxococcota bacterium] diamond 366 85.9 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
30852027 30852027 PRJNA683902_S_NODE_27734_length_188_cov_2.304636_g27290_i0 PRJNA683902 27734 188 2.304636 4.33271568 root 1 Root_unresolved Root_unresolved 105 2.8499999999999997e-25   NR RYZ13579.1 2484252 g27290 i0 86.7 1.93085106382979 60 8 95.7 0 5 184 173 232 RYZ13579.1 MAG: ABC-F family ATP-binding cassette domain-containing protein, partial [Myxococcaceae bacterium] diamond 363 105 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;