RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA683902", tax_kingdom = "Pseudomonadati" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA683902 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3216028 3216028 PRJNA683902_S_NODE_12343_length_368_cov_3.205438_g11899_i0 PRJNA683902 12343 368 3.205438 11.79601184 Nitrospira sp. 70125 Bacteria Bacteria 669 0   NTclustered gi|2863125063|dbj|AP038805.1| 70125 g11899 i0 99.457 168.432065217391 368 2 100 0 1 368 2093995 2094362 MAG: Nitrospira sp. AFB01 DNA, complete genome blastn 61983 669 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
22852620 22852620 PRJNA683902_S_NODE_16858_length_275_cov_2.894958_g16414_i0 PRJNA683902 16858 275 2.894958 7.9611345 Nitrospira 1234 Bacteria Bacteria 486 5.8499999999999985e-133   NTclustered gi|922305621|gb|CP011801.1| 42253 g16414 i0 98.545 534.505454545455 275 4 100 0 1 275 1278124 1278398 Nitrospira moscoviensis strain NSP M-1, complete genome blastn 146989 486 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira moscoviensis
25402349 25402349 PRJNA683902_S_NODE_7320_length_652_cov_4.626016_g6935_i0 PRJNA683902 7320 652 4.626016 30.16162432 Nitrospira 1234 Bacteria Bacteria 636 1.4099999999999995e-177   NTclustered gi|2290907019|gb|CP060499.1| 70125 g6935 i0 93.287 106.282208588957 432 27 66 2 41 471 2683526 2683956 MAG: Nitrospira sp. isolate DH1 chromosome, complete genome blastn 69296 641 0.992199687987519 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;