RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA683902", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA683902 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12655139 12655139 PRJNA683902_S_NODE_40090_length_150_cov_1.203540_g39646_i0 PRJNA683902 40090 150 1.20354 1.80531 Arcobacteraceae 2808963 Bacteria Bacteria 267 4.009999999999999e-67   NTclustered gi|1231709647|emb|LT906455.1| 28197 g39646 i0 98.667 379.973333333333 150 2 100 0 1 150 851616 851467 Arcobacter butzleri strain NCTC12481 genome assembly, chromosome: 1 blastn 56996 267 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter butzleri
27093741 27093741 PRJNA683902_S_NODE_20702_length_232_cov_2.000000_g20258_i0 PRJNA683902 20702 232 2 4.64 Pseudomonadati 3379134 Bacteria Bacteria 40.4 0.0413   NR WP_402370344.1 195 g20258 i0 65.5 0.75 29 10 37.5 0 230 144 51 79 WP_402370344.1 hypothetical protein [Campylobacter coli] diamond 174 40.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
29809386 29809386 PRJNA683902_S_NODE_22691_length_217_cov_1.733333_g22247_i0 PRJNA683902 22691 217 1.733333 3.76133261 Pseudomonadati 3379134 Bacteria Bacteria 48.9 2.72e-5   NR WP_366166521.1 28197 g22247 i0 41 1.70046082949309 61 36 84.3 0 216 34 39 99 WP_366166521.1 DUF2958 domain-containing protein [Aliarcobacter butzleri] diamond 369 48.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter butzleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;