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contig_metadata

17 rows where bioproject = "PRJNA683902", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 17 ✖

tax_kingdom 1

  • Metazoa · 17 ✖

tax_clade 1

bioproject 1

  • PRJNA683902 · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1941366 1941366 PRJNA683902_S_NODE_38382_length_153_cov_5.137931_g37938_i0 PRJNA683902 38382 153 5.137931 7.86103443 Longidorus macrosoma 188093 Nematoda Nematoda 167 4.2899999999999995e-37   NTclustered gi|49339465|gb|AY580055.1| 188093 g37938 i0 86.164 44.7777777777778 159 16 100 6 1 153 2499 2341 Longidorus macrosoma 28S ribosomal RNA gene, 28S-18S intergenic spacer, 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence blastn 6851 167 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dorylaimida Longidoridae Longidorus Longidorus macrosoma
3216238 3216238 PRJNA683902_S_NODE_34703_length_163_cov_1.206349_g34259_i0 PRJNA683902 34703 163 1.206349 1.96634887 Brugia malayi 6279 Nematoda Nematoda 193 7.669999999999999e-45   NTclustered gi|2082298039|ref|XM_043075942.1| 6279 g34259 i0 90.411 22 146 14 90 0 15 160 1 146 Brugia malayi Uncharacterized protein (Bma-tbb-4), partial mRNA blastn 3586 193 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
4493163 4493163 PRJNA683902_S_NODE_18304_length_256_cov_5.461187_g17860_i0 PRJNA683902 18304 256 5.461187 13.98063872 Xiphinema brevicolle 243734 Nematoda Nematoda 244 3.5799999999999996e-60   NTclustered gi|49339471|gb|AY580057.1| 243734 g17860 i0 88.725 11.39453125 204 17 78 5 1 200 3753 3552 Xiphinema brevicollum 28S ribosomal RNA gene, 28S-18S intergenic spacer, 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence blastn 2917 244 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dorylaimida Longidoridae Xiphinema Xiphinema brevicolle
5768973 5768973 PRJNA683902_S_NODE_34185_length_164_cov_2.259843_g33741_i0 PRJNA683902 34185 164 2.259843 3.70614252 Brugia malayi 6279 Nematoda Nematoda 137 3.67e-28   NTclustered gi|2082273969|ref|XM_001902266.2| 6279 g33741 i0 82.317 31.9939024390244 164 23 98 6 2 162 160 320 Brugia malayi ubiquitin-like protein, putative (Bma-ubq-2), partial mRNA blastn 5247 137 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
7553298 7553298 PRJNA683902_S_NODE_23766_length_210_cov_2.219653_g23322_i0 PRJNA683902 23766 210 2.219653 4.6612713 Propanagrolaimus 1510670 Nematoda Nematoda 200 6.22e-47   NTclustered gi|662563250|gb|KJ434174.1| 1519088 g23322 i0 83.81 101.885714285714 210 32 99 2 2 210 1658 1450 Propanagrolaimus sp. LC91 28S ribosomal RNA gene, partial sequence blastn 21396 200 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Propanagrolaimus Propanagrolaimus sp. LC91
10869312 10869312 PRJNA683902_S_NODE_31149_length_174_cov_2.277372_g30705_i0 PRJNA683902 31149 174 2.277372 3.96262728 Panagrolaimus sp. 2726203 Nematoda Nematoda 213 6.35e-51   NTclustered gi|2491200846|gb|OQ842736.1| 2726203 g30705 i0 89.08 73.2068965517241 174 15 99 4 2 173 1033 862 Panagrolaimus sp. isolate NJdiseased small subunit ribosomal RNA gene, partial sequence blastn 12738 213 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Panagrolaimus Panagrolaimus sp.
13419187 13419187 PRJNA683902_S_NODE_18391_length_255_cov_6.142202_g17947_i0 PRJNA683902 18391 255 6.142202 15.6626151 Ecumenicus monohystera 211289 Nematoda Nematoda 370 5.63e-98   NTclustered gi|51093905|gb|AY593013.1| 211289 g17947 i0 95.652 89.4078431372549 230 10 90 0 1 230 299 70 Ecumenicus monohystera clone EcumMon large subunit ribosomal RNA gene, partial sequence blastn 22799 370 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dorylaimida Qudsianematidae Ecumenicus Ecumenicus monohystera
18517253 18517253 PRJNA683902_S_NODE_12195_length_372_cov_18.232836_g11751_i0 PRJNA683902 12195 372 18.232836 67.82614992 Calcaridorylaimus sp. 1 WJW-2018 2486831 Nematoda Nematoda 527 4.819999999999998e-145   NTclustered gi|1512459614|gb|MG921246.1| 2486831 g11751 i0 92.225 85.4301075268817 373 28 100 1 1 372 106 478 Calcaridorylaimus sp. 1 WJW-2018 clone 2 28S ribosomal RNA gene, partial sequence blastn 31780 527 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dorylaimida Dorylaimidae Calcaridorylaimus Calcaridorylaimus sp. 1 WJW-2018
18517430 18517430 PRJNA683902_S_NODE_30475_length_176_cov_7.676259_g30031_i0 PRJNA683902 30475 176 7.676259 13.51021584 Mesodorylaimus cf. nigritulus AV-2005 327447 Nematoda Nematoda 320 3.69e-83   NTclustered gi|90968496|emb|AJ966490.1| 327447 g30031 i0 99.432 100.017045454545 176 1 100 0 1 176 115 290 Mesodorylaimus cf. nigritulus AV-2005 partial 18S rRNA gene, from Belgium, Ghent blastn 17603 320 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dorylaimida Dorylaimidae Mesodorylaimus Mesodorylaimus cf. nigritulus AV-2005
23618073 23618073 PRJNA683902_S_NODE_16079_length_287_cov_7.852000_g15635_i0 PRJNA683902 16079 287 7.852 22.53524 Longidorus macrosoma 188093 Nematoda Nematoda 422 1.76e-113   NTclustered gi|49339465|gb|AY580055.1| 188093 g15635 i0 93.426 19.390243902439 289 12 98 4 5 286 1895 2183 Longidorus macrosoma 28S ribosomal RNA gene, 28S-18S intergenic spacer, 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence blastn 5565 422 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dorylaimida Longidoridae Longidorus Longidorus macrosoma
26861028 26861028 PRJNA683902_S_NODE_30301_length_177_cov_2.507143_g29857_i0 PRJNA683902 30301 177 2.507143 4.43764311 Dirofilaria immitis 6287 Nematoda Nematoda 50.4 1.62e-5   NR MCP9259841.1 6287 g29857 i0 51.9 0.88135593220339 52 25 88.1 0 175 20 2 53 MCP9259841.1 hypothetical protein [Dirofilaria immitis] diamond 156 50.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Dirofilaria Dirofilaria immitis
27851774 27851774 PRJNA683902_S_NODE_35644_length_160_cov_1.878049_g35200_i0 PRJNA683902 35644 160 1.878049 3.0048784 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 53.9 5.67e-7   NR CAK5024798.1 390850 g35200 i0 46.9 12.825 49 26 91.9 0 156 10 38 86 CAK5024798.1 unnamed protein product [Meloidogyne enterolobii] diamond 2052 54.3 0.992633517495396 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii
27903219 27903219 PRJNA683902_S_NODE_37285_length_156_cov_1.966387_g36841_i0 PRJNA683902 37285 156 1.966387 3.06756372 Longidorus vineacola 241698 Nematoda Nematoda 63.5 2.96e-10   NR YP_009346422.1 241698 g36841 i0 54.9 0.980769230769231 51 23 98.1 0 2 154 181 231 YP_009346422.1 cytochrome c oxidase subunit III [Longidorus vineacola] diamond 153 63.5 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dorylaimida Longidoridae Longidorus Longidorus vineacola
29292656 29292656 PRJNA683902_S_NODE_26689_length_193_cov_3.442308_g26245_i0 PRJNA683902 26689 193 3.442308 6.64365444 Trichuris suis 68888 Nematoda Nematoda 62 2.11e-10   NR KFD55927.1 68888 g26245 i0 55.2 0.901554404145078 58 26 90.2 0 18 191 20 77 KFD55927.1 hypothetical protein M513_03051, partial [Trichuris suis] diamond 174 62 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
30872014 30872014 PRJNA683902_S_NODE_23514_length_211_cov_7.051724_g23070_i0 PRJNA683902 23514 211 7.051724 14.87913764 Pristionchus fissidentatus 1538716 Nematoda Nematoda 42 0.0435   NR GMT28504.1 1538716 g23070 i0 51.2 0.582938388625592 41 17 55.5 2 9 125 123 162 GMT28504.1 hypothetical protein PFISCL1PPCAC_19801, partial [Pristionchus fissidentatus] diamond 123 42 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
32295556 32295556 PRJNA683902_S_NODE_25159_length_202_cov_1.727273_g24715_i0 PRJNA683902 25159 202 1.727273 3.48909146 Pristionchus fissidentatus 1538716 Nematoda Nematoda 43.5 0.0113   NR GMT33030.1 1538716 g24715 i0 36.5 0.935643564356436 63 28 80.2 3 166 5 153 212 GMT33030.1 hypothetical protein PFISCL1PPCAC_24327, partial [Pristionchus fissidentatus] diamond 189 43.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
32611400 32611400 PRJNA683902_S_NODE_24120_length_208_cov_1.894737_g23676_i0 PRJNA683902 24120 208 1.894737 3.94105296 Oesophagostomum dentatum 61180 Nematoda Nematoda 59.7 2.46e-8   NR KHJ98883.1 61180 g23676 i0 40.6 1.94711538461538 69 41 99.5 0 1 207 154 222 KHJ98883.1 ribosomal protein L10 [Oesophagostomum dentatum] diamond 405 59.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Oesophagostomum Oesophagostomum dentatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;