RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA683902", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 5 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 5 ✖

bioproject 1

  • PRJNA683902 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6279466 6279466 PRJNA683902_S_NODE_26745_length_193_cov_1.974359_g26301_i0 PRJNA683902 26745 193 1.974359 3.81051287 Polycladida 6163 Platyhelminthes Platyhelminthes 86.1 1.64e-12   NTclustered gi|1436165593|gb|MH700375.1| 2291402 g26301 i0 80.909 35.0880829015544 110 19 56 2 61 168 216 107 Prosthiostomum sp. ISR011 large subunit ribosomal RNA gene, partial sequence blastn 6772 86.1 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Polycladida Prosthiostomidae Prosthiostomum Prosthiostomum sp. ISR011
13929505 13929505 PRJNA683902_S_NODE_29911_length_179_cov_1.098592_g29467_i0 PRJNA683902 29911 179 1.098592 1.96647968 Metazoa 33208 Platyhelminthes Platyhelminthes 331 1.74e-86   NTclustered gi|60687563|gb|AY914894.1| 6182 g29467 i0 100 100 179 0 100 0 1 179 510 332 Schistosoma japonicum unknown mRNA blastn 17900 331 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
16478696 16478696 PRJNA683902_S_NODE_8273_length_570_cov_2.080675_g7862_i0 PRJNA683902 8273 570 2.080675 11.8598475 Metazoa 33208 Platyhelminthes Platyhelminthes 1048 0   NTclustered gi|60689738|gb|AY915254.1| 6182 g7862 i0 99.825 100 570 1 100 0 1 570 8 577 Schistosoma japonicum clone SJCHGC03884 unknown mRNA blastn 57000 1048 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
21577889 21577889 PRJNA683902_S_NODE_37277_length_156_cov_2.151261_g36833_i0 PRJNA683902 37277 156 2.151261 3.35596716 Metazoa 33208 Platyhelminthes Platyhelminthes 289 9e-74   NTclustered gi|60687563|gb|AY914894.1| 6182 g36833 i0 100 100 156 0 100 0 1 156 183 338 Schistosoma japonicum unknown mRNA blastn 15600 289 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
31440979 31440979 PRJNA683902_S_NODE_23996_length_209_cov_1.360465_g23552_i0 PRJNA683902 23996 209 1.360465 2.84337185 Calicophoron daubneyi 300641 Platyhelminthes Platyhelminthes 50.1 2.07e-5   NR CAL5132835.1 300641 g23552 i0 38.9 0.77511961722488 54 33 77.5 0 206 45 26 79 CAL5132835.1 unnamed protein product [Calicophoron daubneyi] diamond 162 50.1 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Paramphistomidae Calicophoron Calicophoron daubneyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;