RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA683902", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 3 ✖

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA683902 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
665383 665383 PRJNA683902_S_NODE_35781_length_160_cov_0.951220_g35337_i0 PRJNA683902 35781 160 0.95122 1.521952 uncultured Naegleria 229031 Heterolobosea other_Eukaryota 296 5.55e-76   NTclustered gi|2206187049|gb|OM946712.1| 229031 g35337 i0 100 100.0125 160 0 100 0 1 160 57 216 Uncultured Naegleria clone STP_A-OC-42 small subunit ribosomal RNA gene, partial sequence blastn 16002 296 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae   uncultured Naegleria
2450919 2450919 PRJNA683902_S_NODE_33942_length_165_cov_1.500000_g33498_i0 PRJNA683902 33942 165 1.5 2.475 Naegleria 5761 Heterolobosea other_Eukaryota 278 2.09e-70   NTclustered gi|2618963742|gb|OR769034.1| 5762 g33498 i0 96.97 21.0121212121212 165 5 100 0 1 165 2663 2827 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 3467 278 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
7043880 7043880 PRJNA683902_S_NODE_17906_length_261_cov_1.625000_g17462_i0 PRJNA683902 17906 261 1.625 4.24125 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 427 3.38e-115   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g17462 i0 96.169 7.36015325670498 261 10 100 0 1 261 2229 1969 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1921 427 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;