RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA683902", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 4 ✖

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA683902 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7553563 7553563 PRJNA683902_S_NODE_35846_length_159_cov_7.450820_g35402_i0 PRJNA683902 35846 159 7.45082 11.8468038 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 294 1.98e-75   NTclustered gi|300078496|gb|GU001158.1| 5778 g35402 i0 100 58.062893081761 159 0 100 0 1 159 1221 1063 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9232 294 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
14694184 14694184 PRJNA683902_S_NODE_18052_length_259_cov_3.099099_g17608_i0 PRJNA683902 18052 259 3.099099 8.02666641 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 468 1.98e-127   NTclustered gi|300078496|gb|GU001158.1| 5778 g17608 i0 99.228 5.56756756756757 259 2 100 0 1 259 1615 1357 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1442 468 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21067778 21067778 PRJNA683902_S_NODE_30017_length_178_cov_3.042553_g29573_i0 PRJNA683902 30017 178 3.042553 5.41574434 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 307 2.91e-79   NTclustered gi|909719645|gb|KT185625.1| 5778 g29573 i0 97.753 1.66292134831461 178 4 100 0 1 178 7104 6927 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 296 307 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22852980 22852980 PRJNA683902_S_NODE_32558_length_169_cov_4.106061_g32114_i0 PRJNA683902 32558 169 4.106061 6.93924309 Vermamoeba 1260114 Tubulinea other_Eukaryota 313 5.859999999999999e-81   NTclustered gi|300078496|gb|GU001158.1| 5778 g32114 i0 100 48.7573964497041 169 0 100 0 1 169 2834 2666 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 8240 313 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;