RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA683902", tax_clade = "Amoebozoa" and tax_phylum = "Evosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Evosea · 6 ✖

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA683902 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3216208 3216208 PRJNA683902_S_NODE_31143_length_174_cov_2.364964_g30699_i0 PRJNA683902 31143 174 2.364964 4.11503736 Dictyostelium discoideum 44689 Evosea other_Eukaryota 233 4.87e-57   NTclustered gi|66821574|ref|XM_639154.1| 352472 g30699 i0 90.805 99.183908045977 174 16 100 0 1 174 415 242 Dictyostelium discoideum AX4 hypothetical protein (act2) mRNA, complete cds blastn 17258 233 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
4493242 4493242 PRJNA683902_S_NODE_28244_length_186_cov_1.295302_g27800_i0 PRJNA683902 28244 186 1.295302 2.40926172 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 99 2.01e-16   NTclustered gi|354683900|gb|JN048926.1| 361077 g27800 i0 81.148 2.91397849462366 122 23 66 0 65 186 526 405 Tieghemostelium lacteum 40S ribosomal protein S14 gene, complete cds blastn 542 99 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
8318527 8318527 PRJNA683902_S_NODE_33867_length_165_cov_1.914062_g33423_i0 PRJNA683902 33867 165 1.914062 3.1582023 Dictyostelium purpureum 5786 Evosea other_Eukaryota 185 1.3e-42   NTclustered gi|330792727|ref|XM_003284391.1| 5786 g33423 i0 87.975 21.0484848484848 158 18 96 1 8 165 71 227 Dictyostelium purpureum elongation factor 1 alpha (DICPUDRAFT_52946), mRNA blastn 3473 185 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
8318542 8318542 PRJNA683902_S_NODE_36527_length_158_cov_1.289256_g36083_i0 PRJNA683902 36527 158 1.289256 2.03702448 Entamoeba nuttalli 412467 Evosea other_Eukaryota 102 1.28e-17   NTclustered gi|672810997|ref|XM_008862315.1| 1076696 g36083 i0 79.31 0.917721518987342 145 30 92 0 4 148 182 38 Entamoeba nuttalli P19 ribosomal S17 protein partial mRNA blastn 145 102 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba nuttalli
27346847 27346847 PRJNA683902_S_NODE_20043_length_238_cov_1.532338_g19599_i0 PRJNA683902 20043 238 1.532338 3.64696444 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 60.1 1.89e-8   NR KYR00047.1 361077 g19599 i0 39.5 4.99159663865546 81 46 98.3 1 2 235 22 102 KYR00047.1 40S ribosomal protein S3a [Tieghemostelium lacteum] diamond 1188 60.5 0.993388429752066 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
31156106 31156106 PRJNA683902_S_NODE_18075_length_259_cov_1.968468_g17631_i0 PRJNA683902 18075 259 1.968468 5.09833212 Cavenderia fasciculata 261658 Evosea other_Eukaryota 80.5 2.09e-17   NR XP_004350852.1 261658 g17631 i0 47.1 3.78764478764479 85 44 98.5 1 258 4 23 106 XP_004350852.1 40S ribosomal protein S25 [Cavenderia fasciculata] diamond 981 80.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;