RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA683669" and tax_phylum = "Minisyncoccota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA683669 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26607156 26607156 PRJNA683669_P_NODE_30241_length_246_cov_0.890173_g30009_i0 PRJNA683669 30241 246 0.890173 2.18982558 Minisyncoccota bacterium 2053589 Bacteria Bacteria 61.6 8.5e-9   NR HVU06200.1 2053589 g30009 i0 39.5 0.98780487804878 81 49 98.8 0 246 4 302 382 HVU06200.1 histidine--tRNA ligase [Candidatus Paceibacterota bacterium] diamond 243 61.6 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
29450299 29450299 PRJNA683669_P_NODE_31190_length_245_cov_0.895349_g30958_i0 PRJNA683669 31190 245 0.895349 2.19360505 Minisyncoccota bacterium 2053589 Bacteria Bacteria 65.5 3.29e-10   NR MDD3662974.1 2053589 g30958 i0 68.2 1.07755102040816 44 14 53.9 0 132 1 1 44 MDD3662974.1 oxidoreductase [Candidatus Paceibacterota bacterium] diamond 264 65.5 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
31156065 31156065 PRJNA683669_P_NODE_21075_length_282_cov_1.105263_g20843_i0 PRJNA683669 21075 282 1.105263 3.11684166 Minisyncoccota bacterium 2053589 Bacteria Bacteria 129 3.66e-33   NR MCK5592451.1 2053589 g20843 i0 84.7 1.5531914893617 72 11 76.6 0 216 1 5 76 MCK5592451.1 argininosuccinate synthase [Candidatus Paceibacterota bacterium] diamond 438 129 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;