contig_metadata
9 rows where bioproject = "PRJNA683669" and tax_phylum = "Gemmatimonadota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26638962 | 26638962 | PRJNA683669_P_NODE_25461_length_254_cov_1.337017_g25229_i0 | PRJNA683669 | 25461 | 254 | 1.337017 | 3.39602318 | Longimicrobium sp. | 2029185 | Bacteria | Bacteria | 47.8 | 7.25e-4 | NR | HET7233202.1 | 2029185 | g25229 | i0 | 38.4 | 0.862204724409449 | 73 | 42 | 83.9 | 2 | 226 | 14 | 232 | 303 | HET7233202.1 choice-of-anchor L domain-containing protein [Longimicrobium sp.] | diamond | 219 | 47.8 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Longimicrobiia | Longimicrobiales | Longimicrobiaceae | Longimicrobium | Longimicrobium sp. | |
| 26702133 | 26702133 | PRJNA683669_P_NODE_24401_length_261_cov_1.361702_g24169_i0 | PRJNA683669 | 24401 | 261 | 1.361702 | 3.55404222 | Gemmatimonadales bacterium | 2448054 | Bacteria | Bacteria | 73.2 | 5.46e-13 | NR | HEY6059746.1 | 2448054 | g24169 | i0 | 45.8 | 1.93103448275862 | 83 | 44 | 94.3 | 1 | 255 | 10 | 50 | 132 | HEY6059746.1 calcium/proton exchanger [Gemmatimonadales bacterium] | diamond | 504 | 73.2 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadales bacterium | |||
| 28977035 | 28977035 | PRJNA683669_P_NODE_10788_length_392_cov_1.448276_g10557_i0 | PRJNA683669 | 10788 | 392 | 1.448276 | 5.67724192 | Gemmatimonadota bacterium | 2026742 | Bacteria | Bacteria | 104 | 5.44e-23 | NR | MDB4882777.1 | 2026742 | g10557 | i0 | 46.7 | 3.41326530612245 | 105 | 54 | 80.4 | 2 | 6 | 320 | 148 | 250 | MDB4882777.1 hypothetical protein [Gemmatimonadota bacterium] | diamond | 1338 | 104 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadota bacterium | |||||
| 30366927 | 30366927 | PRJNA683669_P_NODE_25852_length_251_cov_1.730337_g25620_i0 | PRJNA683669 | 25852 | 251 | 1.730337 | 4.34314587 | Gemmatimonas groenlandica | 2732249 | Bacteria | Bacteria | 42.7 | 0.0415 | NR | WP_171224796.1 | 2732249 | g25620 | i0 | 39.6 | 0.633466135458167 | 53 | 32 | 63.3 | 0 | 171 | 13 | 655 | 707 | WP_171224796.1 hybrid sensor histidine kinase/response regulator [Gemmatimonas groenlandica] | diamond | 159 | 42.7 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonas | Gemmatimonas groenlandica | |
| 31251198 | 31251198 | PRJNA683669_P_NODE_33655_length_241_cov_0.916667_g33423_i0 | PRJNA683669 | 33655 | 241 | 0.916667 | 2.20916747 | Longimicrobium sp. | 2029185 | Bacteria | Bacteria | 42.4 | 0.0486 | NR | HEU4452528.1 | 2029185 | g33423 | i0 | 43.8 | 0.796680497925311 | 64 | 35 | 79.7 | 1 | 241 | 50 | 174 | 236 | HEU4452528.1 SRPBCC family protein [Longimicrobium sp.] | diamond | 192 | 42.4 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Longimicrobiia | Longimicrobiales | Longimicrobiaceae | Longimicrobium | Longimicrobium sp. | |
| 31662260 | 31662260 | PRJNA683669_P_NODE_32077_length_243_cov_1.629412_g31845_i0 | PRJNA683669 | 32077 | 243 | 1.629412 | 3.95947116 | Gemmatimonadota bacterium | 2026742 | Bacteria | Bacteria | 43.5 | 0.0163 | NR | MCH2466768.1 | 2026742 | g31845 | i0 | 36.5 | 0.777777777777778 | 63 | 32 | 76.5 | 2 | 224 | 39 | 165 | 220 | MCH2466768.1 hypothetical protein [Gemmatimonadota bacterium] | diamond | 189 | 43.5 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadota bacterium | |||||
| 31673930 | 31673930 | PRJNA683669_P_NODE_27997_length_249_cov_0.875000_g27765_i0 | PRJNA683669 | 27997 | 249 | 0.875 | 2.17875 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 113 | 6.24e-28 | NR | HVX40603.1 | 2026741 | g27765 | i0 | 63 | 4.89156626506024 | 81 | 30 | 97.6 | 0 | 248 | 6 | 219 | 299 | HVX40603.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [Gemmatimonadaceae bacterium] | diamond | 1218 | 113 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonadaceae bacterium | ||
| 31895468 | 31895468 | PRJNA683669_P_NODE_6597_length_498_cov_1.590588_g6366_i0 | PRJNA683669 | 6597 | 498 | 1.590588 | 7.92112824 | Candidatus Palauibacter | 3056650 | Bacteria | Bacteria | 92.8 | 2.12e-18 | NR | MYI46100.1 | 2026742 | g6366 | i0 | 39.8 | 1.5421686746988 | 128 | 69 | 72.3 | 2 | 11 | 370 | 861 | 988 | MYI46100.1 type I polyketide synthase [Gemmatimonadota bacterium] | diamond | 768 | 92.8 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadota bacterium | |||||
| 32906232 | 32906232 | PRJNA683669_P_NODE_14720_length_338_cov_1.071698_g14489_i0 | PRJNA683669 | 14720 | 338 | 1.071698 | 3.62233924 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 80.5 | 6.03e-15 | NR | MBA3760570.1 | 2448054 | g14489 | i0 | 40 | 5.38757396449704 | 105 | 62 | 93.2 | 1 | 338 | 24 | 263 | 366 | MBA3760570.1 Ig-like domain-containing protein [Gemmatimonadales bacterium] | diamond | 1821 | 80.5 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadales bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;