RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA683669", tax_kingdom = "Fungi" and tax_phylum = "Olpidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Olpidiomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA683669 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13418958 13418958 PRJNA683669_P_NODE_25911_length_251_cov_1.297753_g25679_i0 PRJNA683669 25911 251 1.297753 3.25736003 Eukaryota 2759 Fungi Fungi 158 2.13e-43   NR BAL15351.1 278681 g25679 i0 84.1 15.7888446215139 82 13 98 0 248 3 311 392 BAL15351.1 translation elongation factor 2, partial [Olpidium bornovanus] diamond 3963 158 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
14694038 14694038 PRJNA683669_P_NODE_5692_length_540_cov_0.989293_g5464_i0 PRJNA683669 5692 540 0.989293 5.3421822 Olpidium bornovanus 278681 Fungi Fungi 325 1e-105   NR BAL15351.1 278681 g5464 i0 88.8 1.97777777777778 179 20 99.4 0 2 538 318 496 BAL15351.1 translation elongation factor 2, partial [Olpidium bornovanus] diamond 1068 325 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
16477638 16477638 PRJNA683669_P_NODE_13013_length_359_cov_0.842657_g12782_i0 PRJNA683669 13013 359 0.842657 3.02513863 Opisthokonta 33154 Fungi Fungi 150 8.02e-41   NR KAG5459462.1 278681 g12782 i0 74.3 6.75208913649025 101 25 84.4 1 304 2 63 162 KAG5459462.1 MAG: ATP-dependent RNA helicase eIF4A [Olpidium bornovanus] diamond 2424 150 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;