RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA683669", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA683669 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31251177 31251177 PRJNA683669_P_NODE_17035_length_314_cov_1.273859_g16804_i0 PRJNA683669 17035 314 1.273859 3.99991726 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-6 2013756 Bacteria Bacteria 137 2.03e-36   NR PKN18719.1 2013756 g16804 i0 68.5 1.69108280254777 89 28 85 0 3 269 327 415 PKN18719.1 MAG: acetyl-CoA C-acyltransferase [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-6] diamond 531 137 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-6
32560212 32560212 PRJNA683669_P_NODE_11079_length_388_cov_0.936508_g10848_i0 PRJNA683669 11079 388 0.936508 3.63365104 delta/epsilon subdivisions 68525 Bacteria Bacteria 125 6.62e-34   NR CAB1058634.1 698986 g10848 i0 52.6 7.1520618556701 116 50 88.1 4 1 342 26 138 CAB1058634.1 hypothetical protein D1BOALGB6SA_3390 [Olavius sp. associated proteobacterium Delta 1] diamond 2775 125 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Olavius sp. associated proteobacterium Delta 1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;