RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA683669", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA683669 · 8 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13928793 13928793 PRJNA683669_P_NODE_11371_length_382_cov_9.009709_g11140_i0 PRJNA683669 11371 382 9.009709 34.41708838 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 179 4.759999999999999e-55   NR CEP00218.1 37360 g11140 i0 69.7 2.78010471204188 122 36 95.8 1 15 380 4 124 CEP00218.1 hypothetical protein PBRA_007952 [Plasmodiophora brassicae] diamond 1062 179 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28420411 28420411 PRJNA683669_P_NODE_6266_length_512_cov_1.790433_g6036_i0 PRJNA683669 6266 512 1.790433 9.16701696 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 187 5.46e-57   NR CEP03653.1 37360 g6036 i0 57.4 8.244140625 155 66 90.8 0 470 6 6 160 CEP03653.1 hypothetical protein PBRA_003260 [Plasmodiophora brassicae] diamond 4221 187 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29335898 29335898 PRJNA683669_P_NODE_31349_length_244_cov_1.783626_g31117_i0 PRJNA683669 31349 244 1.783626 4.35204744 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 125 9.38e-34   NR SPQ95976.1 37360 g31117 i0 74.1 18.922131147541 81 21 99.6 0 244 2 114 194 SPQ95976.1 unnamed protein product [Plasmodiophora brassicae] diamond 4617 125 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29430354 29430354 PRJNA683669_P_NODE_8689_length_433_cov_1.925000_g8458_i0 PRJNA683669 8689 433 1.925 8.33525 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 106 4.56e-25   NR CEO99991.1 37360 g8458 i0 48.4 7.45496535796767 124 62 84.5 1 66 431 22 145 CEO99991.1 hypothetical protein PBRA_007725 [Plasmodiophora brassicae] diamond 3228 106 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30156715 30156715 PRJNA683669_P_NODE_132_length_2545_cov_9.673139_g110_i0 PRJNA683669 132 2545 9.673139 246.18138755 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 800 6.249999999999998e-279   NR SPQ94571.1 37360 g110 i0 57 2.59214145383104 760 308 88.1 7 54 2294 1 754 SPQ94571.1 unnamed protein product [Plasmodiophora brassicae] diamond 6597 800 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
31124433 31124433 PRJNA683669_P_NODE_23875_length_264_cov_1.989529_g23643_i0 PRJNA683669 23875 264 1.989529 5.25235656 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 90.1 1.05e-18   NR CEO94832.1 37360 g23643 i0 56.5 0.965909090909091 85 32 92 2 1 243 262 345 CEO94832.1 hypothetical protein PBRA_003645 [Plasmodiophora brassicae] diamond 255 90.1 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
31852090 31852090 PRJNA683669_P_NODE_26517_length_251_cov_0.865169_g26285_i0 PRJNA683669 26517 251 0.865169 2.17157419 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 63.9 1.4e-9   NR CEP03404.1 37360 g26285 i0 47.5 0.729083665338645 61 32 72.9 0 66 248 341 401 CEP03404.1 hypothetical protein PBRA_003164 [Plasmodiophora brassicae] diamond 183 63.9 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
31915429 31915429 PRJNA683669_P_NODE_20857_length_283_cov_1.466667_g20625_i0 PRJNA683669 20857 283 1.466667 4.15066761 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 89.4 2.42e-19   NR CEO99991.1 37360 g20625 i0 45.2 3.65724381625442 93 51 98.6 0 3 281 29 121 CEO99991.1 hypothetical protein PBRA_007725 [Plasmodiophora brassicae] diamond 1035 89.4 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;