RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

33 rows where bioproject = "PRJNA683669", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 33 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 33 ✖

bioproject 1

  • PRJNA683669 · 33 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
664964 664964 PRJNA683669_P_NODE_26021_length_251_cov_0.865169_g25789_i0 PRJNA683669 26021 251 0.865169 2.17157419 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 123 6.13e-33   NR HEY6226334.1 2499141 g25789 i0 82.9 0.836653386454183 70 12 83.7 0 249 40 150 219 HEY6226334.1 molybdate ABC transporter permease subunit [Verrucomicrobiia bacterium] diamond 210 123 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
1941005 1941005 PRJNA683669_P_NODE_30542_length_245_cov_1.732558_g30310_i0 PRJNA683669 30542 245 1.732558 4.2447671 Pedosphaera parvula 1032527 Bacteria Bacteria 285 2.0000000000000002e-72   NTclustered gi|183579829|emb|AM905426.1| 320771 g30310 i0 91.787 24.4530612244898 207 13 84 4 35 239 1458 1254 Bacterium Ellin514 23S rRNA gene, isolate Ellin514 blastn 5991 285 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera parvula
3215829 3215829 PRJNA683669_P_NODE_28363_length_248_cov_0.880000_g28131_i0 PRJNA683669 28363 248 0.88 2.1824 Verrucomicrobia bacterium IMCC26134 1637999 Bacteria Bacteria 165 2.76e-36   NTclustered gi|807238858|gb|CP011265.1| 1637999 g28131 i0 79.087 1.06048387096774 263 37 99 8 2 246 3031845 3031583 Verrucomicrobia bacterium IMCC26134, complete genome blastn 263 165 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobia bacterium IMCC26134
7043649 7043649 PRJNA683669_P_NODE_25886_length_251_cov_1.382022_g25654_i0 PRJNA683669 25886 251 1.382022 3.46887522 Lacunisphaera sp. 1961806 Bacteria Bacteria 139 1.26e-39   NR HEY0865356.1 1961806 g25654 i0 80.7 1.9840637450199201 83 16 99.2 0 251 3 26 108 HEY0865356.1 SIS domain-containing protein [Lacunisphaera sp.] diamond 498 139 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Lacunisphaera Lacunisphaera sp.
12144323 12144323 PRJNA683669_P_NODE_22170_length_275_cov_1.524752_g21938_i0 PRJNA683669 22170 275 1.524752 4.193068 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 457 4.58e-124   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g21938 i0 96.715 11.7818181818182 274 9 99 0 1 274 3556396 3556669 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 3240 457 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
23617849 23617849 PRJNA683669_P_NODE_24079_length_263_cov_1.547368_g23847_i0 PRJNA683669 24079 263 1.547368 4.06957784 Prosthecobacter vanneervenii 48466 Bacteria Bacteria 431 2.639999999999999e-116   NTclustered gi|12583975|gb|AF245379.1|AF245379 48466 g23847 i0 96.198 35.0684410646388 263 10 100 0 1 263 225 487 Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence blastn 9223 431 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter vanneervenii
26638982 26638982 PRJNA683669_P_NODE_6681_length_494_cov_4.211401_g6450_i0 PRJNA683669 6681 494 4.211401 20.80432094 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 58.2 1.64e-7   NR MEZ5302849.1 2026801 g6450 i0 37.4 1.31781376518219 107 60 63.8 3 70 384 4 105 MEZ5302849.1 hypothetical protein [Verrucomicrobiales bacterium] diamond 651 58.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
26713687 26713687 PRJNA683669_P_NODE_29761_length_246_cov_1.780347_g29529_i0 PRJNA683669 29761 246 1.780347 4.37965362 Bacteria 2 Bacteria Bacteria 49.3 1.96e-4   NR MBP7825619.1 2026799 g29529 i0 49.2 2.28048780487805 61 29 74.4 1 183 1 14 72 MBP7825619.1 tetratricopeptide repeat protein [Verrucomicrobiota bacterium] diamond 561 49.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
26987133 26987133 PRJNA683669_P_NODE_8302_length_444_cov_1.037736_g8071_i0 PRJNA683669 8302 444 1.037736 4.60754784 Opitutaceae bacterium 2006848 Bacteria Bacteria 61.2 1.17e-7   NR HXB01788.1 2006848 g8071 i0 36.8 0.918918918918919 136 72 89.2 3 436 41 555 680 HXB01788.1 chitobiase/beta-hexosaminidase C-terminal domain-containing protein [Opitutaceae bacterium] diamond 408 61.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
27271801 27271801 PRJNA683669_P_NODE_31283_length_245_cov_0.895349_g31051_i0 PRJNA683669 31283 245 0.895349 2.19360505 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 108 1.3e-25   NR HVY70421.1 2499141 g31051 i0 72.7 1.92244897959184 77 21 94.3 0 232 2 412 488 HVY70421.1 Mur ligase family protein [Verrucomicrobiia bacterium] diamond 471 108 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
27493009 27493009 PRJNA683669_P_NODE_26063_length_251_cov_0.865169_g25831_i0 PRJNA683669 26063 251 0.865169 2.17157419 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 91.7 3.01e-21   NR MEM7014728.1 2026799 g25831 i0 57.5 3.87250996015936 80 34 95.6 0 244 5 18 97 MEM7014728.1 nucleoside monophosphate kinase [Verrucomicrobiota bacterium] diamond 972 91.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27682750 27682750 PRJNA683669_P_NODE_29564_length_247_cov_0.885057_g29332_i0 PRJNA683669 29564 247 0.885057 2.18609079 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 65.9 1.84e-10   NR MEI8340649.1 2026799 g29332 i0 58.3 0.582995951417004 48 20 58.3 0 18 161 249 296 MEI8340649.1 methylenetetrahydrofolate reductase [NAD(P)H] [Verrucomicrobiota bacterium] diamond 144 65.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28029811 28029811 PRJNA683669_P_NODE_28885_length_248_cov_0.880000_g28653_i0 PRJNA683669 28885 248 0.88 2.1824 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 153 1.2499999999999997e-42   NR MES2696394.1 2026799 g28653 i0 91.3 6.79838709677419 80 7 96.8 0 9 248 324 403 MES2696394.1 MFS transporter [Verrucomicrobiota bacterium] diamond 1686 153 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28187336 28187336 PRJNA683669_P_NODE_23466_length_267_cov_1.556701_g23234_i0 PRJNA683669 23466 267 1.556701 4.15639167 Verrucomicrobiales bacterium VVV1 2015575 Bacteria Bacteria 178 2.5599999999999995e-55   NR OYU98006.1 2015575 g23234 i0 89.9 1 89 9 100 0 1 267 55 143 OYU98006.1 MAG: hypothetical protein CFE26_28305, partial [Verrucomicrobiales bacterium VVV1] diamond 267 178 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium VVV1
29051892 29051892 PRJNA683669_P_NODE_14508_length_340_cov_1.415730_g14277_i0 PRJNA683669 14508 340 1.41573 4.813482 Pseudomonadati 3379134 Bacteria Bacteria 46.2 0.00713   NR WP_200278776.1 490093 g14277 i0 37.1 2.71764705882353 62 39 54.7 0 274 89 1099 1160 WP_200278776.1 sulfatase-like hydrolase/transferase [Haloferula rosea] diamond 924 46.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Haloferula Haloferula rosea
29671183 29671183 PRJNA683669_P_NODE_15530_length_329_cov_1.203125_g15299_i0 PRJNA683669 15530 329 1.203125 3.95828125 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 181 2.28e-51   NR MBI4661420.1 2026799 g15299 i0 74.1 29.9908814589666 112 26 99.4 2 328 2 146 257 MBI4661420.1 phosphoenolpyruvate carboxykinase (GTP) [Verrucomicrobiota bacterium] diamond 9867 181 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29671195 29671195 PRJNA683669_P_NODE_22810_length_271_cov_1.555556_g22578_i0 PRJNA683669 22810 271 1.555556 4.21555676 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 67.4 1.07e-10   NR MCC6234332.1 2026801 g22578 i0 76.9 1.2619926199262 39 9 43.2 0 155 271 1 39 MCC6234332.1 dipeptidase [Verrucomicrobiales bacterium] diamond 342 67.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
29671198 29671198 PRJNA683669_P_NODE_24750_length_259_cov_1.118280_g24518_i0 PRJNA683669 24750 259 1.11828 2.8963452 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 48.9 2.89e-4   NR HPC62536.1 2026799 g24518 i0 54.2 1.48262548262548 48 21 55.6 1 151 8 3 49 HPC62536.1 L-threonylcarbamoyladenylate synthase [Verrucomicrobiota bacterium] diamond 384 48.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29702708 29702708 PRJNA683669_P_NODE_14330_length_342_cov_1.408922_g14099_i0 PRJNA683669 14330 342 1.408922 4.81851324 Cerasicoccus maritimus 490089 Bacteria Bacteria 166 2.7199999999999994e-48   NR WP_309396120.1 490089 g14099 i0 67.3 4.95614035087719 113 36 99.1 1 2 340 60 171 WP_309396120.1 methylenetetrahydrofolate reductase [NAD(P)H] [Cerasicoccus maritimus] diamond 1695 166 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales Cerasicoccaceae Cerasicoccus Cerasicoccus maritimus
29987414 29987414 PRJNA683669_P_NODE_27731_length_249_cov_0.875000_g27499_i0 PRJNA683669 27731 249 0.875 2.17875 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 81.6 7.9e-16   NR MBK9140258.1 2026799 g27499 i0 45 0.963855421686747 80 44 96.4 0 241 2 538 617 MBK9140258.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 240 81.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30492964 30492964 PRJNA683669_P_NODE_24173_length_262_cov_2.037037_g23941_i0 PRJNA683669 24173 262 2.037037 5.33703694 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 46.6 0.00197   NR MEI6248818.1 2026799 g23941 i0 45.5 0.50381679389313 44 24 50.4 0 221 90 316 359 MEI6248818.1 helicase associated domain-containing protein [Verrucomicrobiota bacterium] diamond 132 46.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30714020 30714020 PRJNA683669_P_NODE_27614_length_249_cov_0.875000_g27382_i0 PRJNA683669 27614 249 0.875 2.17875 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 123 1.17e-32   NR MES2693382.1 2026799 g27382 i0 82.9 0.843373493975904 70 12 84.3 0 212 3 1 70 MES2693382.1 Gfo/Idh/MocA family oxidoreductase [Verrucomicrobiota bacterium] diamond 210 123 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30745657 30745657 PRJNA683669_P_NODE_21514_length_279_cov_1.495146_g21282_i0 PRJNA683669 21514 279 1.495146 4.17145734 Opitutaceae bacterium 2006848 Bacteria Bacteria 128 3.56e-32   NR HEX2852173.1 2006848 g21282 i0 62.6 0.978494623655914 91 34 97.8 0 279 7 194 284 HEX2852173.1 hypothetical protein [Opitutaceae bacterium] diamond 273 128 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
30745677 30745677 PRJNA683669_P_NODE_33434_length_242_cov_0.911243_g33202_i0 PRJNA683669 33434 242 0.911243 2.20520806 Opitutales bacterium 2026772 Bacteria Bacteria 49.3 1.86e-4   NR MDA8990499.1 2026772 g33202 i0 44 1.77272727272727 50 28 62 0 1 150 322 371 MDA8990499.1 BspA family leucine-rich repeat surface protein [Opitutales bacterium] diamond 429 49.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium
30777340 30777340 PRJNA683669_P_NODE_32694_length_243_cov_0.905882_g32462_i0 PRJNA683669 32694 243 0.905882 2.20129326 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 45.1 0.00345   NR MES2695225.1 2026799 g32462 i0 63.4 1.03703703703704 41 13 48.1 1 233 117 60 100 MES2695225.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 252 45.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30840498 30840498 PRJNA683669_P_NODE_34214_length_241_cov_0.886905_g33982_i0 PRJNA683669 34214 241 0.886905 2.13744105 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 81.6 7.37e-16   NR MBS0648567.1 2026799 g33982 i0 53.8 0.995850622406639 80 37 99.6 0 241 2 399 478 MBS0648567.1 AAA family ATPase [Verrucomicrobiota bacterium] diamond 240 81.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30915425 30915425 PRJNA683669_P_NODE_30034_length_246_cov_0.890173_g29802_i0 PRJNA683669 30034 246 0.890173 2.18982558 Pseudomonadati 3379134 Bacteria Bacteria 42.7 0.0374   NR MDE3275663.1 2026799 g29802 i0 40.4 1.39024390243902 57 34 69.5 0 15 185 130 186 MDE3275663.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 342 42.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31030285 31030285 PRJNA683669_P_NODE_33975_length_241_cov_0.916667_g33743_i0 PRJNA683669 33975 241 0.916667 2.20916747 Prosthecobacter sp. 1965333 Bacteria Bacteria 110 5.430000000000001e-26   NR WP_395747842.1 1965333 g33743 i0 98.3 0.721991701244813 58 1 72.2 0 2 175 1629 1686 WP_395747842.1 DUF1800 family protein [Prosthecobacter sp.] diamond 174 110 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
31061883 31061883 PRJNA683669_P_NODE_22635_length_272_cov_1.547739_g22403_i0 PRJNA683669 22635 272 1.547739 4.20985008 Chthoniobacter sp. 2510640 Bacteria Bacteria 109 1.43e-25   NR HEY3901011.1 2510640 g22403 i0 59.6 0.981617647058823 89 36 98.2 0 267 1 271 359 HEY3901011.1 transketolase [Chthoniobacter sp.] diamond 267 109 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter sp.
31061896 31061896 PRJNA683669_P_NODE_31995_length_244_cov_0.900585_g31763_i0 PRJNA683669 31995 244 0.900585 2.1974274 Opitutus sp. 1913982 Bacteria Bacteria 46.2 0.0013   NR MBA3850419.1 1913982 g31763 i0 71.4 1.26639344262295 28 8 34.4 0 86 3 7 34 MBA3850419.1 hypothetical protein [Opitutus sp.] diamond 309 46.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp.
31294429 31294429 PRJNA683669_P_NODE_18315_length_302_cov_1.344978_g18083_i0 PRJNA683669 18315 302 1.344978 4.06183356 Pseudomonadati 3379134 Bacteria Bacteria 43.9 0.0131   NR HVR67371.1 2499141 g18083 i0 42 3.40728476821192 81 37 77.5 6 300 67 78 151 HVR67371.1 allene oxide cyclase family protein [Verrucomicrobiia bacterium] diamond 1029 43.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
31694016 31694016 PRJNA683669_P_NODE_34197_length_241_cov_0.916667_g33965_i0 PRJNA683669 34197 241 0.916667 2.20916747 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 55.8 4.62e-7   NR MDB6167440.1 2026799 g33965 i0 83.9 1.20746887966805 31 5 38.6 0 240 148 182 212 MDB6167440.1 DNA-binding response regulator [Verrucomicrobiota bacterium] diamond 291 55.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31927096 31927096 PRJNA683669_P_NODE_33437_length_242_cov_0.911243_g33205_i0 PRJNA683669 33437 242 0.911243 2.20520806 Bacteria 2 Bacteria Bacteria 115 3.96e-28   NR HOY60217.1 2026799 g33205 i0 67.5 4.95867768595041 80 25 99.2 1 1 240 308 386 HOY60217.1 aldehyde dehydrogenase family protein [Verrucomicrobiota bacterium] diamond 1200 115 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;