RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA683669", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA683669 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27251779 27251779 PRJNA683669_P_NODE_8843_length_430_cov_1.725490_g8612_i0 PRJNA683669 8843 430 1.72549 7.419607 root 1 Root_unresolved Root_unresolved 201 3.69e-60   NR MCB1084282.1 34094 g8612 i0 65.7 3.02093023255814 143 48 99.1 1 428 3 263 405 MCB1084282.1 hypothetical protein [Simkania sp.] diamond 1299 202 0.995049504950495 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.
32737466 32737466 PRJNA683669_P_NODE_14360_length_342_cov_1.141264_g14129_i0 PRJNA683669 14360 342 1.141264 3.90312288 Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_49_9 1797605 Bacteria Bacteria 90.1 2.49e-18   NR OGN64303.1 1797605 g14129 i0 39.8 3.5 103 62 90.4 0 23 331 196 298 OGN64303.1 MAG: hypothetical protein A3E80_05595 [Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_49_9] diamond 1197 90.1 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_49_9

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;