RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA683669", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA683669 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28977068 28977068 PRJNA683669_P_NODE_31628_length_244_cov_0.900585_g31396_i0 PRJNA683669 31628 244 0.900585 2.1974274 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 42.7 0.0378   NR MDD4940028.1 2035772 g31396 i0 38.3 0.577868852459016 47 29 57.8 0 19 159 471 517 MDD4940028.1 carbamoyl-phosphate synthase large subunit [Candidatus Omnitrophota bacterium] diamond 141 42.7 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
29198131 29198131 PRJNA683669_P_NODE_8769_length_432_cov_0.855153_g8538_i0 PRJNA683669 8769 432 0.855153 3.69426096 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 55.1 1.44e-5   NR MFH1854335.1 2035772 g8538 i0 28.5 3 151 83 97.9 7 7 429 783 918 MFH1854335.1 SdrD B-like domain-containing protein [Candidatus Omnitrophota bacterium] diamond 1296 55.1 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
30303781 30303781 PRJNA683669_P_NODE_10492_length_397_cov_1.425926_g10261_i0 PRJNA683669 10492 397 1.425926 5.66092622 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 45.1 0.0286   NR HOU36641.1 2035772 g10261 i0 44.1 0.445843828715365 59 30 44.6 2 123 299 337 392 HOU36641.1 indolepyruvate ferredoxin oxidoreductase subunit alpha [Candidatus Omnitrophota bacterium] diamond 177 45.1 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
30840471 30840471 PRJNA683669_P_NODE_19434_length_292_cov_2.086758_g19202_i0 PRJNA683669 19434 292 2.086758 6.09333336 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 128 6.689999999999999e-32   NR MCM8781282.1 2035772 g19202 i0 65.9 2.85616438356164 91 31 93.5 0 17 289 394 484 MCM8781282.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 834 128 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;