RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA683669", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 3 ✖

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA683669 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27745786 27745786 PRJNA683669_P_NODE_32604_length_243_cov_0.905882_g32372_i0 PRJNA683669 32604 243 0.905882 2.20129326 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 123 1.3799999999999998e-31   NR XP_001582473.1 412133 g32372 i0 66.7 1 81 27 100 0 243 1 119 199 XP_001582473.1 dehydrogenase-related family [Trichomonas vaginalis G3] diamond 243 123 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
31061878 31061878 PRJNA683669_P_NODE_19395_length_293_cov_1.050000_g19163_i0 PRJNA683669 19395 293 1.05 3.0765 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 51.6 4.05e-5   NR XP_068369873.1 1144522 g19163 i0 58.3 0.368600682593857 36 15 36.9 0 181 288 117 152 XP_068369873.1 Myb-like DNA-binding domain containing protein [Tritrichomonas foetus] diamond 108 51.6 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
31820440 31820440 PRJNA683669_P_NODE_21077_length_282_cov_1.105263_g20845_i0 PRJNA683669 21077 282 1.105263 3.11684166 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 63.9 2.06e-9   NR XP_067772094.1 135588 g20845 i0 39.1 7.14893617021277 92 42 83 3 8 241 168 259 XP_067772094.1 serine/threonine-protein kinase Nek1-like [Histomonas meleagridis] diamond 2016 63.9 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;