RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

16 rows where bioproject = "PRJNA683669", tax_clade = "Apusozoa" and tax_superkingdom = "Eukaryota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Eukaryota · 16 ✖

tax_clade 1

  • Apusozoa · 16 ✖

bioproject 1

  • PRJNA683669 · 16 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14693863 14693863 PRJNA683669_P_NODE_14212_length_343_cov_1.996296_g13981_i0 PRJNA683669 14212 343 1.996296 6.84729528 Singekia franciliensis 2925418 Root_unresolved Root_unresolved 137 8.7e-28   NTclustered gi|2206682165|gb|OM966638.1| 2925418 g13981 i0 89.286 58.536443148688 112 9 32 2 1 111 6329 6220 Singekia franciliensis strain ORSAYFEB19APU1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 20078 137 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Singekia Singekia franciliensis
24891109 24891109 PRJNA683669_P_NODE_25800_length_252_cov_1.134078_g25568_i0 PRJNA683669 25800 252 1.134078 2.85787656 Thecamonas trahens 529818 Root_unresolved Root_unresolved 261 3.49e-65   NTclustered gi|923120664|ref|XM_013898350.1| 461836 g25568 i0 87.556 89.1507936507936 225 28 89 0 20 244 1095 871 Thecamonas trahens ATCC 50062 ATP-dependent RNA helicase eIF4A (AMSG_10343), partial mRNA blastn 22466 261 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
27430070 27430070 PRJNA683669_P_NODE_29543_length_247_cov_0.885057_g29311_i0 PRJNA683669 29543 247 0.885057 2.18609079 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 127 8.649999999999999e-32   NR XP_013754965.1 461836 g29311 i0 74.4 1.9919028340081 82 20 98.4 1 3 245 203 284 XP_013754965.1 transketolase domain-containing protein [Thecamonas trahens ATCC 50062] diamond 492 127 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
27871800 27871800 PRJNA683669_P_NODE_33365_length_242_cov_0.911243_g33133_i0 PRJNA683669 33365 242 0.911243 2.20520806 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 73.9 3.83e-13   NR XP_013757381.1 461836 g33133 i0 46.8 0.979338842975207 79 42 97.9 0 241 5 1250 1328 XP_013757381.1 ABC transporter [Thecamonas trahens ATCC 50062] diamond 237 73.9 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
27871809 27871809 PRJNA683669_P_NODE_7065_length_481_cov_1.509804_g6834_i0 PRJNA683669 7065 481 1.509804 7.26215724 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 147 1.72e-41   NR XP_013758125.1 461836 g6834 i0 53.6 0.873180873180873 140 63 86.7 2 419 3 26 164 XP_013758125.1 lipocalin family protein [Thecamonas trahens ATCC 50062] diamond 420 147 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
27871812 27871812 PRJNA683669_P_NODE_9885_length_407_cov_3.667665_g9654_i0 PRJNA683669 9885 407 3.667665 14.92739655 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 63.2 1.71e-9   NR XP_013758370.1 461836 g9654 i0 27.2 0.921375921375921 125 84 89.9 3 42 407 4 124 XP_013758370.1 uncharacterized protein AMSG_04698 [Thecamonas trahens ATCC 50062] diamond 375 63.2 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
28313956 28313956 PRJNA683669_P_NODE_31066_length_245_cov_0.895349_g30834_i0 PRJNA683669 31066 245 0.895349 2.19360505 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 43.1 0.0268   NR XP_013759100.1 461836 g30834 i0 55.6 0.330612244897959 27 12 33.1 0 2 82 97 123 XP_013759100.1 CMRP Flagellar component [Thecamonas trahens ATCC 50062] diamond 81 43.1 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
29481830 29481830 PRJNA683669_P_NODE_9350_length_418_cov_2.846377_g9119_i0 PRJNA683669 9350 418 2.846377 11.89785586 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 84.3 1.25e-17   NR XP_013758370.1 461836 g9119 i0 36.4 0.84688995215311 118 70 84.7 1 61 414 8 120 XP_013758370.1 uncharacterized protein AMSG_04698 [Thecamonas trahens ATCC 50062] diamond 354 84.3 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
29702747 29702747 PRJNA683669_P_NODE_6890_length_486_cov_5.046005_g6659_i0 PRJNA683669 6890 486 5.046005 24.5235843 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 110 1.1300000000000002e-27   NR XP_013758370.1 461836 g6659 i0 39.3 0.864197530864197 140 80 86.4 1 447 28 8 142 XP_013758370.1 uncharacterized protein AMSG_04698 [Thecamonas trahens ATCC 50062] diamond 420 110 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
30251930 30251930 PRJNA683669_P_NODE_14452_length_341_cov_1.055970_g14221_i0 PRJNA683669 14452 341 1.05597 3.6008577 root 1 Root_unresolved Root_unresolved 57 1.19e-6   NR XP_013756049.1 461836 g14221 i0 38 6.16715542521994 108 65 94.1 2 337 17 532 638 XP_013756049.1 NAD-specific glutamate dehydrogenase [Thecamonas trahens ATCC 50062] diamond 2103 57 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
31156098 31156098 PRJNA683669_P_NODE_9715_length_411_cov_1.366864_g9484_i0 PRJNA683669 9715 411 1.366864 5.61781104 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 90.5 4.5e-20   NR XP_013758370.1 461836 g9484 i0 43.7 0.868613138686131 119 62 83.2 2 20 361 28 146 XP_013758370.1 uncharacterized protein AMSG_04698 [Thecamonas trahens ATCC 50062] diamond 357 90.5 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
31831994 31831994 PRJNA683669_P_NODE_24957_length_257_cov_1.673913_g24725_i0 PRJNA683669 24957 257 1.673913 4.30195641 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 71.6 3.02e-12   NR XP_013757829.1 461836 g24725 i0 52 3.53696498054475 75 31 82.9 2 44 256 188 261 XP_013757829.1 uncharacterized protein AMSG_05408 [Thecamonas trahens ATCC 50062] diamond 909 71.6 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
32580091 32580091 PRJNA683669_P_NODE_24119_length_263_cov_1.215789_g23887_i0 PRJNA683669 24119 263 1.215789 3.19752507 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 68.2 5.18e-11   NR XP_013754572.1 461836 g23887 i0 41.4 0.992395437262357 87 47 97 3 258 4 415 499 XP_013754572.1 dihydropyrimidinase, variant [Thecamonas trahens ATCC 50062] diamond 261 68.2 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
32622871 32622871 PRJNA683669_P_NODE_4860_length_589_cov_1.044574_g4634_i0 PRJNA683669 4860 589 1.044574 6.15254086 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 141 7.609999999999998e-35   NR XP_013760817.1 461836 g4634 i0 41.8 2.98471986417657 196 113 99.3 1 588 4 499 694 XP_013760817.1 alpha-actinin A [Thecamonas trahens ATCC 50062] diamond 1758 141 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
32768700 32768700 PRJNA683669_P_NODE_33020_length_242_cov_0.911243_g32788_i0 PRJNA683669 33020 242 0.911243 2.20520806 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 63.9 1.29e-9   NR XP_013759600.1 461836 g32788 i0 49.4 0.979338842975207 79 38 97.9 2 4 240 2912 2988 XP_013759600.1 uncharacterized protein AMSG_03687 [Thecamonas trahens ATCC 50062] diamond 237 63.9 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
32863226 32863226 PRJNA683669_P_NODE_28020_length_249_cov_0.875000_g27788_i0 PRJNA683669 28020 249 0.875 2.17875 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 83.2 2.32e-16   NR XP_013759166.1 461836 g27788 i0 63.3 0.72289156626506 60 22 72.3 0 248 69 786 845 XP_013759166.1 ion transporter [Thecamonas trahens ATCC 50062] diamond 180 83.2 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;