RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA682774" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA682774 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27682718 27682718 PRJNA682774_P_NODE_4344_length_248_cov_0.891429_g4315_i0 PRJNA682774 4344 248 0.891429 2.21074392 Rotaria socialis 392032 Rotifera other_Eukaryota 50.4 7.11e-5   NR CAF3091028.1 392032 g4315 i0 36.9 3.14516129032258 65 37 78.6 1 202 8 12 72 CAF3091028.1 unnamed protein product [Rotaria socialis] diamond 780 50.4 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria socialis
28262159 28262159 PRJNA682774_P_NODE_3426_length_253_cov_0.866667_g3397_i0 PRJNA682774 3426 253 0.866667 2.19266751 root 1 Root_unresolved Root_unresolved 124 2.49e-32   NR RNA35013.1 10195 g3397 i0 78.6 18.8774703557312 84 17 99.6 1 1 252 148 230 RNA35013.1 Phosphoenolpyruvate phosphomutase [Brachionus plicatilis] diamond 4776 125 0.992 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus plicatilis
32906227 32906227 PRJNA682774_P_NODE_4800_length_245_cov_0.906977_g4771_i0 PRJNA682774 4800 245 0.906977 2.22209365 Eurotatoria 2816136 Rotifera other_Eukaryota 83.2 6.6e-17   NR RNA12146.1 10195 g4771 i0 43.2 2.97551020408163 81 43 99.2 1 2 244 167 244 RNA12146.1 E3 ubiquitin ligase, partial [Brachionus plicatilis] diamond 729 83.2 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus plicatilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;