RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA682774" and tax_phylum = "Planctomycetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA682774 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3215471 3215471 PRJNA682774_P_NODE_4863_length_245_cov_0.906977_g4834_i0 PRJNA682774 4863 245 0.906977 2.22209365 Phycisphaerales bacterium 2052180 Bacteria Bacteria 159 1.27e-34   NTclustered gi|2108005054|gb|CP070772.1| 2052180 g4834 i0 79.821 0.910204081632653 223 41 90 4 18 238 685773 685993 MAG: Phycisphaerales bacterium isolate bin220 chromosome blastn 223 159 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
27820452 27820452 PRJNA682774_P_NODE_2944_length_270_cov_1.583756_g2915_i0 PRJNA682774 2944 270 1.583756 4.2761412 Bacteria 2 Bacteria Bacteria 103 2.13e-23   NR MBI3829501.1 2026780 g2915 i0 58.4 1.97777777777778 89 36 98.9 1 269 3 343 430 MBI3829501.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase [Planctomycetota bacterium] diamond 534 103 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
30019116 30019116 PRJNA682774_P_NODE_5011_length_244_cov_0.912281_g4982_i0 PRJNA682774 5011 244 0.912281 2.22596564 Roseimaritima multifibrata 1930274 Bacteria Bacteria 87.8 1.51e-18   NR WP_145352363.1 1930274 g4982 i0 66.7 3.13524590163934 57 19 70.1 0 66 236 49 105 WP_145352363.1 metallophosphoesterase [Roseimaritima multifibrata] diamond 765 87.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Roseimaritima Roseimaritima multifibrata
31800334 31800334 PRJNA682774_P_NODE_5377_length_242_cov_0.923077_g5348_i0 PRJNA682774 5377 242 0.923077 2.23384634 PVC group 1783257 Bacteria Bacteria 65.9 2.46e-10   NR KPK77428.1 1703411 g5348 i0 76.3 10.3636363636364 38 9 47.1 0 1 114 364 401 KPK77428.1 MAG: elongation factor Tu [Phycisphaerae bacterium SM23_30] diamond 2508 65.9 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae       Phycisphaerae bacterium SM23_30
32105260 32105260 PRJNA682774_P_NODE_4638_length_246_cov_0.901734_g4609_i0 PRJNA682774 4638 246 0.901734 2.21826564 Planctomycetota bacterium 2026780 Bacteria Bacteria 160 1.9e-44   NR MCH7992811.1 2026780 g4609 i0 96.3 0.98780487804878 81 3 98.8 0 2 244 2 82 MCH7992811.1 carbamoyltransferase [Planctomycetota bacterium] diamond 243 160 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
32768667 32768667 PRJNA682774_P_NODE_5160_length_243_cov_0.917647_g5131_i0 PRJNA682774 5160 243 0.917647 2.22988221 Planctomycetales bacterium 2053591 Bacteria Bacteria 142 2.5499999999999998e-40   NR MCA9216007.1 2053591 g5131 i0 85.2 2 81 11 98.8 1 3 242 107 187 MCA9216007.1 hypothetical protein [Planctomycetales bacterium] diamond 486 142 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales     Planctomycetales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;