RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA682774", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA682774 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29272490 29272490 PRJNA682774_P_NODE_4429_length_247_cov_0.896552_g4400_i0 PRJNA682774 4429 247 0.896552 2.21448344 Bacteria 2 Bacteria Bacteria 102 3.819999999999999e-24   NR MCA1574572.1 1978231 g4400 i0 64.6 3.98380566801619 82 29 99.6 0 2 247 153 234 MCA1574572.1 hydroxymethylbilane synthase [Acidobacteriota bacterium] diamond 984 103 0.990291262135922 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
30682235 30682235 PRJNA682774_P_NODE_4313_length_248_cov_0.891429_g4284_i0 PRJNA682774 4313 248 0.891429 2.21074392 Acidobacteriota bacterium 1978231 Bacteria Bacteria 79 1.43e-15   NR MCH7987297.1 1978231 g4284 i0 100 0.435483870967742 36 0 43.5 0 247 140 211 246 MCH7987297.1 aminomethyl transferase family protein [Acidobacteriota bacterium] diamond 108 79 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31725566 31725566 PRJNA682774_P_NODE_3577_length_252_cov_0.871508_g3548_i0 PRJNA682774 3577 252 0.871508 2.19620016 Acidobacteriota bacterium 1978231 Bacteria Bacteria 147 2.98e-40   NR HEX9699457.1 1978231 g3548 i0 86.7 3.95238095238095 83 11 98.8 0 3 251 225 307 HEX9699457.1 signal recognition particle protein [Acidobacteriota bacterium] diamond 996 147 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
32232121 32232121 PRJNA682774_P_NODE_1058_length_419_cov_1.343931_g1029_i0 PRJNA682774 1058 419 1.343931 5.63107089 Terriglobia bacterium 2081523 Bacteria Bacteria 45.8 0.0164   NR HET7213853.1 2081523 g1029 i0 46.8 0.336515513126492 47 22 31.5 1 93 224 36 82 HET7213853.1 sugar phosphate isomerase/epimerase family protein [Terriglobia bacterium] diamond 141 45.8 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia       Terriglobia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;