RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA682774", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA682774 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28925265 28925265 PRJNA682774_P_NODE_3668_length_252_cov_0.871508_g3639_i0 PRJNA682774 3668 252 0.871508 2.19620016 Bilophila 35832 Bacteria Bacteria 168 1.06e-51   NR MFR2386331.1 35833 g3639 i0 100 1.97619047619048 83 0 98.8 0 251 3 6 88 MFR2386331.1 P-loop NTPase [Bilophila wadsworthia] diamond 498 168 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Bilophila Bilophila wadsworthia
30966954 30966954 PRJNA682774_P_NODE_1494_length_359_cov_1.363636_g1465_i0 PRJNA682774 1494 359 1.363636 4.89545324 Desulfovibrio sp. 885 Bacteria Bacteria 44.3 0.0381   NR MCR5171133.1 885 g1465 i0 41.1 0.467966573816156 56 33 46.8 0 326 159 285 340 MCR5171133.1 transposase [Desulfovibrio sp.] diamond 168 44.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;