RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA682774", tax_clade = "Stenosarchaea group" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 2 ✖

tax_clade 1

  • Stenosarchaea group · 2 ✖

bioproject 1

  • PRJNA682774 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28218883 28218883 PRJNA682774_P_NODE_2466_length_291_cov_1.431193_g2437_i0 PRJNA682774 2466 291 1.431193 4.16477163 Methanosarcinales archaeon 2250255 Archaea Archaea 110 7.62e-26   NR RYE85525.1 2250255 g2437 i0 55.1 0.917525773195876 89 39 90.7 1 2 265 600 688 RYE85525.1 MAG: hypothetical protein EOO65_00170 [Methanosarcinales archaeon] diamond 267 110 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales     Methanosarcinales archaeon
31536090 31536090 PRJNA682774_P_NODE_3476_length_253_cov_0.866667_g3447_i0 PRJNA682774 3476 253 0.866667 2.19266751 Methanocorpusculum sp. 2058474 Archaea Archaea 48.9 2.72e-4   NR HJJ47081.1 2058474 g3447 i0 45.3 1.54150197628458 64 35 75.9 0 249 58 227 290 HJJ47081.1 Hsp70 family protein [Methanocorpusculum sp.] diamond 390 48.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum Methanocorpusculum sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;