RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA682774" and tax_clade = "Metamonada"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Metamonada · 4 ✖

bioproject 1

  • PRJNA682774 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9593246 9593246 PRJNA682774_P_NODE_1928_length_323_cov_1.296000_g1899_i0 PRJNA682774 1928 323 1.296 4.18608 Carpediemonas membranifera 201153 Fornicata other_Eukaryota 379 1.22e-100   NTclustered gi|339759363|dbj|AB600294.1| 201153 g1899 i0 89.597 88.4396284829721 298 31 92 0 26 323 1 298 Carpediemonas membranifera gene for alpha-tubulin, partial cds, strain: BICM blastn 28566 379 1 Eukaryota Metamonada   Fornicata       Carpediemonas Carpediemonas membranifera
27366876 27366876 PRJNA682774_P_NODE_1403_length_368_cov_2.115254_g1374_i0 PRJNA682774 1403 368 2.115254 7.78413472 Anaeramoeba ignava 1746090 Root_unresolved Root_unresolved 91.7 3.02e-19   NR KAJ5073268.1 1746090 g1374 i0 55.2 0.709239130434783 87 34 70.9 2 265 5 34 115 KAJ5073268.1 substrate carrier family protein a [Anaeramoeba ignava] diamond 261 91.7 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba ignava
31567749 31567749 PRJNA682774_P_NODE_3496_length_253_cov_0.866667_g3467_i0 PRJNA682774 3496 253 0.866667 2.19266751 Anaeramoeba flamelloides 1746091 Root_unresolved Root_unresolved 47.8 7.32e-4   NR KAJ3432750.1 1746091 g3467 i0 48.9 1.11462450592885 47 23 54.5 1 251 114 2903 2949 KAJ3432750.1 beige/beach-related [Anaeramoeba flamelloides] diamond 282 47.8 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba flamelloides
32485171 32485171 PRJNA682774_P_NODE_1079_length_415_cov_1.359649_g1050_i0 PRJNA682774 1079 415 1.359649 5.64254335 Anaeramoeba flamelloides 1746091 Root_unresolved Root_unresolved 62.8 2.29e-9   NR KAJ3427653.1 1746091 g1050 i0 37.2 1.87951807228916 86 48 60.7 2 162 413 3 84 KAJ3427653.1 coactosin [Anaeramoeba flamelloides] diamond 780 62.8 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba flamelloides

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;