RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA682774" and tax_clade = "Apusozoa"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • Apusozoa · 3 ✖

bioproject 1

  • PRJNA682774 · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1940631 1940631 PRJNA682774_P_NODE_3042_length_266_cov_2.357513_g3013_i0 PRJNA682774 3042 266 2.357513 6.27098458 Thecamonas trahens 529818 Root_unresolved Root_unresolved 121 6.57e-23   NTclustered gi|923136453|ref|XM_013906238.1| 461836 g3013 i0 81.818 0.796992481203007 143 26 54 0 110 252 290 148 Thecamonas trahens ATCC 50062 50S ribosomal protein L36e (AMSG_01644), partial mRNA blastn 212 121 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
24890778 24890778 PRJNA682774_P_NODE_1720_length_339_cov_2.018797_g1691_i0 PRJNA682774 1720 339 2.018797 6.84372183 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 143 5.87e-39   NR XP_013760592.1 461836 g1691 i0 63.2 1.00884955752212 114 39 100 2 339 1 194 305 XP_013760592.1 adenine nucleotide translocator [Thecamonas trahens ATCC 50062] diamond 342 143 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
27113551 27113551 PRJNA682774_P_NODE_3362_length_254_cov_2.154696_g3333_i0 PRJNA682774 3362 254 2.154696 5.47292784 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 69.7 9.33e-13   NR XP_013759960.1 461836 g3333 i0 72.1 2.83464566929134 43 12 50.8 0 132 4 25 67 XP_013759960.1 40S ribosomal protein S12 [Thecamonas trahens ATCC 50062] diamond 720 69.7 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;